Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61850 152 / 2e-43 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT2G46590 128 / 1e-33 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT4G24060 120 / 7e-31 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT4G00940 106 / 2e-26 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT1G64620 106 / 6e-26 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT3G45610 103 / 7e-26 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 102 / 4e-25 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT5G65590 102 / 1e-24 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 102 / 3e-24 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G66940 99 / 4e-24 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010113 [exp] 358 / 2e-123 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10023032 [exp] 109 / 5e-27 AT1G64620 171 / 1e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10033218 [exp] 109 / 5e-27 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10017313 [exp] 106 / 6e-26 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 106 / 8e-26 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10003208 [exp] 106 / 2e-25 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1) Lus10035504 [exp] 99 / 6e-25 AT1G51700 134 / 3e-40 DOF zinc finger protein 1 (.1) Lus10042114 [exp] 98 / 6e-25 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10029767 [exp] 102 / 1e-24 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G174300 [exp] 166 / 4e-49 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.014G100900 [exp] 144 / 7e-41 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.015G009300 [exp] 134 / 6e-37 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 123 / 1e-32 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 121 / 9e-32 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.001G086400 [exp] 118 / 9e-31 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G058200 [exp] 101 / 5e-24 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 99 / 2e-23 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.003G034200 [exp] 97 / 3e-23 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1) Potri.007G038100 [exp] 98 / 5e-23 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10012619 pacid=23161379 polypeptide=Lus10012619 locus=Lus10012619.g ID=Lus10012619.BGIv1.0 annot-version=v1.0 ATGGATGCTGCTCAATGGCCAAAGGACATTAACCTTGCAAGACCAATGGAAGAGATGGTGGCATCAGCAAGCAACATCAATACAAACAACTACATGACCA ACAACAACAACAACAACAACAACAATAATAATAATAATAATAGCAACTTGTCTGGTAATATTCCAAAGGTGGGAGGCGAGACAGGAGGAGATGTTCAGAA CAAGAAAGCAGCAGTAAGGCCACAGGAACAAGTGAACTGCCCGAGATGCAACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACTCAA CCTCGATACTTCTGCAAATCTTGCAGGAGGTACTGGACTGCCGGTGGCTCACTCAGAAATGTCCCTGTTGGTGGAGGTTCTAGAAAGAACAAGAGATCTT CTTCTCTGCCCTCCTCCTCCTCGATAACTAATACTACTACTTCCTCATCATCTGGTATCAATAAGCTAACTACAATCCCAGATTTGAACCCTCCAAGCTT CTCCTCCCAAAACCCTAAGGCCTTCCAGGGTCAAGACCTTAACTTGGGCTTCCCTCCTATTCATCAAGACACTACTCATCAAGGTCTGGAGGTGCTGAGA AGTAATGGGATGGCAGGTAACAATCCGACAAGGGGATTGAACTCATTCATAACAAATCCAACAATGGCGTCTGGTACGGATAATAATCGCCATCCAAACC CAGTACTCTACTCATCGAACATTTCTTCATCGTCGTCAGCAGCAGGATTCCATATGCAAGAAGAATTCAAGCCACCAACTCTCAACTTCTCCATTGATCA TCATCAACAACAACAGCAACATCACCATGGGATTGATCAACATGATGAGAGTGGAGGGGAGATGGATAATGTGGGAAGAATCTTGTTTCCATTTGGAGAT CACCACCACCACCTTCTCAAACAGCAGCAGCAACACCAGATTCCAGGGGACAAGGGACAGCAAGAACATGGACATCATGTTGATCATAATAATAATAGTG GAGGAGGAGGAGGAGGAGGAGGAGGGTATTGGAGTGGGATGTTAGGCGGATCGGGAGCTTGGTGA
AA sequence Show only first row Show all	>Lus10012619 pacid=23161379 polypeptide=Lus10012619 locus=Lus10012619.g ID=Lus10012619.BGIv1.0 annot-version=v1.0 MDAAQWPKDINLARPMEEMVASASNINTNNYMTNNNNNNNNNNNNNNSNLSGNIPKVGGETGGDVQNKKAAVRPQEQVNCPRCNSTNTKFCYYNNYSLTQ PRYFCKSCRRYWTAGGSLRNVPVGGGSRKNKRSSSLPSSSSITNTTTSSSSGINKLTTIPDLNPPSFSSQNPKAFQGQDLNLGFPPIHQDTTHQGLEVLR SNGMAGNNPTRGLNSFITNPTMASGTDNNRHPNPVLYSSNISSSSSAAGFHMQEEFKPPTLNFSIDHHQQQQQHHHGIDQHDESGGEMDNVGRILFPFGD HHHHLLKQQQQHQIPGDKGQQEHGHHVDHNNNSGGGGGGGGGYWSGMLGGSGAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Lus10012619 [exp]	0	1
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10004436 [exp]	1.0	0.9013
AT5G64120			Peroxidase superfamily protein...		Lus10007050 [exp]	11.6	0.8805
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10029552 [exp]	12.0	0.8902
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10025733 [exp]	13.1	0.8645
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10040319 [exp]	15.3	0.8400
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004704 [exp]	19.6	0.8891
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10037425 [exp]	20.3	0.8907
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	27.5	0.8727
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013383 [exp]	36.5	0.8071
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	38.2	0.8346

Compare expression of checked genes

Lus10012619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.