Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010116 [exp] 261 / 8e-91 ND 36 / 0.007 Lus10003758 [exp] 213 / 1e-70 ND / Lus10003757 [exp] 191 / 9e-63 ND / Lus10010117 [exp] 190 / 9e-63 ND 39 / 4e-04 Lus10028048 [exp] 187 / 8e-62 ND / Lus10014738 [exp] 156 / 2e-49 ND / Lus10002731 [exp] 149 / 7e-47 ND / Lus10008314 [exp] 114 / 9e-33 ND / Lus10035753 [exp] 115 / 2e-32 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G087000 [exp] 43 / 3e-05 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.005G208400 [exp] 39 / 0.0004 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012621 pacid=23161375 polypeptide=Lus10012621 locus=Lus10012621.g ID=Lus10012621.BGIv1.0 annot-version=v1.0 ATGGTTTCTCACCATCCCAAAATCACAATCCCTAAAGAAACACAAAAAGAAACTTGTAAACGACGCCGTCTTTTTCCAAGCGAGACAATGTATTGCTCGT CGAAACTACATGCGGTACCAGCAGCAATTATGCTTATAGGTATACTCTCGATCAGTGTCGAGGGCAAGTTCCCCGACACGACCATCCTCAGCGGTCCGAA TTGCACTGGAAAGTCGACCACGAATACGTACAATGACAATGTGATGCATCTCCTCGATACGTTTGTGAAGGACACAAAGATAAGCAGAAGGAATATCTAT GGAGATCGACAGATGAACCACAGCCACCCGAATCGAAACCTGGGGTCGCCTTATGGCGAGTCGGTTTGCTACCAAGACCTTGGAAGGCTTGACTGTTACA ATTGTCTGTTCAATGCTAAGGGAAAAATCGACAATGGTTGCTTGCACCCGATTGCTGCTAGCATCAAACTCCAGGACTGCTCCATTTGGTTCAATGCCCA CCCTTAG
AA sequence Show only first row Show all	>Lus10012621 pacid=23161375 polypeptide=Lus10012621 locus=Lus10012621.g ID=Lus10012621.BGIv1.0 annot-version=v1.0 MVSHHPKITIPKETQKETCKRRRLFPSETMYCSSKLHAVPAAIMLIGILSISVEGKFPDTTILSGPNCTGKSTTNTYNDNVMHLLDTFVKDTKISRRNIY GDRQMNHSHPNRNLGSPYGESVCYQDLGRLDCYNCLFNAKGKIDNGCLHPIAASIKLQDCSIWFNAHP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012621 [exp]	0	1
AT4G11290			Peroxidase superfamily protein...		Lus10039681 [exp]	16.6	0.6311
					Lus10013722 [exp]	22.7	0.6768
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10012506 [exp]	22.8	0.6787
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	27.9	0.6518
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10041571 [exp]	39.6	0.6247
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	44.0	0.6175
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	61.9	0.6229
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	63.1	0.6141
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	63.7	0.6239
AT3G22040			Domain of unknown function (DU...		Lus10007506 [exp]	84.3	0.5480

Compare expression of checked genes

Lus10012621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.