Plant FIBer expression Database

Lus10012623 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010118
[exp]
245 / 5e-85 AT1G04520 40 / 3e-04 plasmodesmata-located protein 2 (.1)
Lus10028049
[exp]
208 / 2e-70 AT1G04520 38 / 9e-04 plasmodesmata-located protein 2 (.1)
Lus10003759
[exp]
176 / 9e-58 ND 38 / 9e-04
Lus10010115
[exp]
155 / 7e-50 AT5G48540 41 / 5e-05 receptor-like protein kinase-related family protein (.1)
Lus10003758
[exp]
146 / 6e-45 ND /
Lus10028050
[exp]
110 / 7e-32 ND 36 / 0.004
Lus10035753
[exp]
108 / 4e-30 ND /
Lus10008314
[exp]
105 / 6e-30 ND /
Lus10014738
[exp]
99 / 2e-27 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G208400
[exp]
38 / 0.0004 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01657 Stress-antifung Salt stress response/antifungal
Representative CDS sequence
>Lus10012623 pacid=23161362 polypeptide=Lus10012623 locus=Lus10012623.g ID=Lus10012623.BGIv1.0 annot-version=v1.0
ATGCATTCCTCGCCGACATTAGCAGCATATGTAGTCTTGGTTATGGGTCTTATAAGTATGCTCCTCCTCGTGGAGGCCAAACTTCCTAACACCAAAGTCG
TGGTCAAACCTGCTTGCGATGTCGGATATGCGAGCAAGAGATACAACAATTACGCGATCCACTTGTTGGATTTCCTCGTGGACGAAACGAAGAACATGTA
CAAGAATAAGGACGGGAGTTACACATACTGTCACAGCTATCCTGATCTGGATTCGGGGTCGGCCAACGGAGTGGGGAATTGTGGTAGAAAGCTTAAGAAG
TTGGATTGTTGGTCGTGTCTTCGAAATGCTAAGGACAAGCTCAAGTTGGCTTGTCCCAGGGCAGTAGGTGGTAACATCACTCATACAGACTGCTCCATCT
CCTTCAACCGGATTCCTTAA
AA sequence
>Lus10012623 pacid=23161362 polypeptide=Lus10012623 locus=Lus10012623.g ID=Lus10012623.BGIv1.0 annot-version=v1.0
MHSSPTLAAYVVLVMGLISMLLLVEAKLPNTKVVVKPACDVGYASKRYNNYAIHLLDFLVDETKNMYKNKDGSYTYCHSYPDLDSGSANGVGNCGRKLKK
LDCWSCLRNAKDKLKLACPRAVGGNITHTDCSISFNRIP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10012623
[exp]
0 1
Lus10032803
[exp]
1.0 0.9382
AT3G16180 Major facilitator superfamily ... Lus10009506
[exp]
6.5 0.8705
Lus10033149
[exp]
7.9 0.8705
AT1G47960 ATC/VIF1, C/VIF... cell wall / vacuolar inhibitor... Lus10023215
[exp]
9.2 0.8705
AT3G14040 Pectin lyase-like superfamily ... Lus10023364
[exp]
10.2 0.8705
Lus10042684
[exp]
11.0 0.7453
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Lus10027028
[exp]
11.2 0.8705
AT5G33340 CDR1 CONSTITUTIVE DISEASE RESISTANC... Lus10003281
[exp]
12.1 0.8705
AT1G28270 RALFL4 ralf-like 4 (.1) Lus10005541
[exp]
12.6 0.6214
AT1G21880 LYM1 lysm domain GPI-anchored prote... Lus10006200
[exp]
13.0 0.8705

Lus10012623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.