Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01280 748 / 0 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G07990 340 / 3e-111 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G36220 324 / 5e-105 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT3G48310 301 / 1e-96 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT5G04330 296 / 2e-94 Cytochrome P450 superfamily protein (.1) AT3G48280 295 / 2e-94 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT2G40890 294 / 2e-93 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G31940 290 / 4e-92 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT3G48270 288 / 1e-91 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT5G05260 288 / 2e-91 CYP79A2 cytochrome p450 79a2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013150 [exp] 336 / 8e-110 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 335 / 3e-109 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 324 / 5e-105 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10019457 [exp] 319 / 2e-103 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021158 [exp] 315 / 1e-101 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 311 / 5e-100 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10035502 [exp] 311 / 5e-100 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10022303 [exp] 306 / 4e-98 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10021620 [exp] 305 / 1e-97 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171800 [exp] 821 / 0 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.007G082900 [exp] 360 / 2e-119 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 358 / 8e-119 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084800 [exp] 354 / 4e-117 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 343 / 3e-112 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G083000 [exp] 342 / 4e-112 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.012G090000 [exp] 342 / 4e-112 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G084200 [exp] 339 / 3e-111 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083300 [exp] 337 / 2e-110 AT3G26330 363 / 7e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.012G089900 [exp] 336 / 6e-110 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10012624 pacid=23161341 polypeptide=Lus10012624 locus=Lus10012624.g ID=Lus10012624.BGIv1.0 annot-version=v1.0 ATGGACATCATTTTCCTCTGTTCGATTCTTCTCTGCGCGACGCTAGTCGCCAGCATCCTGCAACGCCGTCGTCATTACCCGCAGCAACCCAAGTCCAGAC ACCTTCCACCAGGCCCAGCTGGTTGGCCCATTTTCGGCAACCTTCTCCAATTGGGCCAACAGCCCCACAGAGACCTCGCTTCCTTGTGCGACAAGTACGG CCCATTGGTCTACCTCCGTCTGGGCAACGTGGATGCAATCACCACCAACGACCCGGACACAATCCGAGAAATACTCCTCCGTCAGGACGAGGTGTTCGCT TCCCGGCCACGGACACTCGCAGCCGTCCACCTGGCATACGGCTGCGGCGACGTCGCACTGGCCCCGATGGGCCCGCAGTGGAAGCGGATGAGAAGGATCT GTATGGAGCATTTGCTGACTACAAAGAGGCTGGAGTCGTTTGCAAAGCAGAGGGAGGAAGAGGCCCAGCATTTGGTTCAGGATATTTGGGCCCGGTCCAA AACGGGAAAGCCCATTGACATGAGAGAGGTGTTGGGTGGGTTTTCGATGAACAACGTGACGAGGATGTTGCTTGGGAAGCAGTACTTTGGAGCTGGATCG TCGGGCCCACAGGAGGCGATGGAGTTCATGCACGTGACGCACGAGCTGTTTAAGCTTTTGGGGCTGATATATTTGGGAGACTACTTGCCGTTTTGGAGGT GGATTGATCCTTTTGGTTGCGAGAGCAAGATGGTTGAAGTCGGCAAGAGGATTGACGACTTCCATATCAAAATTATTGAAGAGCACAGAGTCAAGAATAG ATTGAAAGGAGATCATGAGGATGATGATGATAAAGAGATGGACTTTGTTGATGTCTTGTTGTCACTTCCAGGAAATGATGGCAAGCAGCATATGGATGAT CTGGAGATCAAAGCTCTTATCCAGGATATGATAGCCGCGGCAACAGACACATCGGCAGTGACCAACGAATGGGCAATGGCGGAAGTGATAAAGCACCCTC GCGTCCTCCGCAAGATCCAACAAGAGATCGATTTTGTGGTGGGTCGTGATCGGATGGTCAAAGAATCAGACCTGACTCAACTCAACTACTTGCGCTGCGT CGTACGCGAAACCTTCCGTATGCACCCGGCGGGCCCACTCCTAATCCCACACGAGTCTCTACGCGCCACCACCATCAACGGCTACTACATCCCTGCCAAG ACCAGAGTCTTCATCAACACCCACGGGCTGGGCCGGAACACCGAGATATGGGTCGACGTGGATGATTTTCGGCCCGAGAGGCACTGGCTAGGTGACGGAA GCCGAGTGGAAATTAGCCACGGAGCTGATTTCAAGATCCTGCCGTTTAGCGCCGGCAAGAGGAAGTGCCCTGGCGCGCCGCTCGGCGTGACCCTTGTGCT TATGGCTCTCGCTCGTTTGTTTCATTGTTTTGATTGGTCTCCGCCGGAGGGTGAAAGTATTGATACGGTGGAGGTTTATGGGATGACCATGCCCAAAGCC AAGCCGCTCTTGGCTGGGGCCATGAGACCGGTATTAAGCCACGGTTAG
AA sequence Show only first row Show all	>Lus10012624 pacid=23161341 polypeptide=Lus10012624 locus=Lus10012624.g ID=Lus10012624.BGIv1.0 annot-version=v1.0 MDIIFLCSILLCATLVASILQRRRHYPQQPKSRHLPPGPAGWPIFGNLLQLGQQPHRDLASLCDKYGPLVYLRLGNVDAITTNDPDTIREILLRQDEVFA SRPRTLAAVHLAYGCGDVALAPMGPQWKRMRRICMEHLLTTKRLESFAKQREEEAQHLVQDIWARSKTGKPIDMREVLGGFSMNNVTRMLLGKQYFGAGS SGPQEAMEFMHVTHELFKLLGLIYLGDYLPFWRWIDPFGCESKMVEVGKRIDDFHIKIIEEHRVKNRLKGDHEDDDDKEMDFVDVLLSLPGNDGKQHMDD LEIKALIQDMIAAATDTSAVTNEWAMAEVIKHPRVLRKIQQEIDFVVGRDRMVKESDLTQLNYLRCVVRETFRMHPAGPLLIPHESLRATTINGYYIPAK TRVFINTHGLGRNTEIWVDVDDFRPERHWLGDGSRVEISHGADFKILPFSAGKRKCPGAPLGVTLVLMALARLFHCFDWSPPEGESIDTVEVYGMTMPKA KPLLAGAMRPVLSHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10012624 [exp]	0	1
					Lus10021851 [exp]	10.1	0.6787
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	14.4	0.6787
					Lus10012440 [exp]	17.6	0.6787
					Lus10008791 [exp]	20.3	0.6787
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	20.9	0.6775
AT3G55210	NAC	ANAC063	NAC domain containing protein ...		Lus10031639 [exp]	22.6	0.6774
					Lus10021139 [exp]	27.1	0.6759
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004310 [exp]	30.3	0.6490
					Lus10026713 [exp]	31.0	0.6739
					Lus10031183 [exp]	33.2	0.6697

Compare expression of checked genes

Lus10012624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.