Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61750 368 / 3e-125 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 209 / 9e-64 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G25290 104 / 2e-24 Auxin-responsive family protein (.1.2) AT5G47530 97 / 5e-22 Auxin-responsive family protein (.1) AT4G17280 96 / 2e-21 Auxin-responsive family protein (.1) AT4G12980 94 / 5e-21 Auxin-responsive family protein (.1) AT5G35735 93 / 1e-20 Auxin-responsive family protein (.1) AT3G59070 92 / 5e-20 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 85 / 1e-17 Auxin-responsive family protein (.1) AT5G54830 57 / 2e-08 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010120 [exp] 583 / 0 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10016080 [exp] 193 / 2e-57 AT3G07570 397 / 9e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001180 [exp] 189 / 6e-56 AT3G07570 377 / 5e-130 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10025877 [exp] 112 / 7e-28 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10038225 [exp] 105 / 5e-26 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10012350 [exp] 101 / 3e-23 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10002274 [exp] 99 / 1e-22 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10012305 [exp] 97 / 2e-22 AT3G07570 165 / 8e-49 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10021553 [exp] 94 / 6e-22 AT3G25290 165 / 5e-49 Auxin-responsive family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098700 [exp] 471 / 2e-165 AT3G61750 402 / 2e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.014G197500 [exp] 226 / 2e-70 AT3G07570 402 / 7e-140 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.006G015000 [exp] 107 / 1e-25 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 104 / 2e-24 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.010G156200 [exp] 103 / 3e-24 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 101 / 2e-23 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 101 / 2e-23 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 101 / 2e-23 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.019G096600 [exp] 99 / 1e-22 AT5G47530 296 / 1e-97 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 99 / 1e-22 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0559 [flax] [poplar] CBD9-like PF03351 [flax] [poplar] DOMON DOMON domain CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10012625 pacid=23161388 polypeptide=Lus10012625 locus=Lus10012625.g ID=Lus10012625.BGIv1.0 annot-version=v1.0 ATGGCATCTTCTTCTTCTTCTTACATCAAGCATCATCAGCCTCTTCTTTGCTTATTCTGTTTTCCATTGATTCTACTTCTTTTCTCCAAAGTCAACCAAG TAGTAACTGCAGCTGCTTCAGATAACTTCACTACAATAGTCCCCAACCATGGCAAATCTGCAACAACCTCAGAGCTCTGCAACAACATCGATCCCACCTC ATTTCTCCCTCCTCCTTACTCCAACATCACAAACATGGCTTGCATCCCTATCTGGAACGATTTCATCCTCAGGTATCACAAGGGAGAAAATAATGTGATG ACATTCGTACTATCGGGGGTGTACACGAGCGGGTGGGTTGGGATGGGGTTTTCGAAGAACGGGATGATGGTTGGATCAAGTGCCGTAGTGGGTTGGGTGA CCAAGAAAGGAATCCCTATGATCAAACAGTACTATTTGCAAGGATCTAAGCAGTCACAAGTTATTGCAGATTCAGGGGAACTTGACCTCAACCACATCCC ACCTGCTGTAGCTCTTCACCCTCCACAGATTTACTTGTCTTTTCAGGCTAGGTTCCAGACTCCTCTCCAAAGGCAACCCATCCTCCTTGCCTTCGGGACC AAGTATCCCCATCATCATCGATTGTCCCACCACGACGATAAGACTACTCTTCTGTTCGACTTCTCCGCAGGTCCAGGATCTGGTGTAGTGATAAATGCAG GGGAAATGAAGAGAAACCATGGGGTTTTGGCTACATTAGGATGGGGTGTTTTCTTACCAGTTGGAGCCATTGTTGCAAGATACCTTAGGCATAATGAACC CTTGTGGTTTTATCTCCATGCTTTCATCCAATTTGTGGGATTTCTCTTTGGACTTGCAGCTATAGTACTAGGCCAGCAACTCTATTACAAAACCAATGCC AATGTCCCTGCACATAGAGGGATTGGAATATTTGTTCTAACCCTAGCCATTCTTCAGATACTGGCATTTTTCCTGAGACCCAGCAAGGATTCAAAGATCC GCAAGTACTGGAATTGGTACCACAGTTGGACTGGGAGAGCTGCACTCTTCTTTGCTGCTGTAAATGTGGTGCTGGGAATCCACGTGGGACATGCTGGAAC GACGTGGAAGGTGATGTATGGGTTGATTCTTGCTGCCATTTTGTTGGCGGTCATATCTCTGGAAGCACTCTACTGGTTGAGGAGGAGGAGATCGGATCAG AAGAACGTTGAAATCAATTATCCTCCTGCATCCAACTTCCAGATGAACTCCATGCAATGA
AA sequence Show only first row Show all	>Lus10012625 pacid=23161388 polypeptide=Lus10012625 locus=Lus10012625.g ID=Lus10012625.BGIv1.0 annot-version=v1.0 MASSSSSYIKHHQPLLCLFCFPLILLLFSKVNQVVTAAASDNFTTIVPNHGKSATTSELCNNIDPTSFLPPPYSNITNMACIPIWNDFILRYHKGENNVM TFVLSGVYTSGWVGMGFSKNGMMVGSSAVVGWVTKKGIPMIKQYYLQGSKQSQVIADSGELDLNHIPPAVALHPPQIYLSFQARFQTPLQRQPILLAFGT KYPHHHRLSHHDDKTTLLFDFSAGPGSGVVINAGEMKRNHGVLATLGWGVFLPVGAIVARYLRHNEPLWFYLHAFIQFVGFLFGLAAIVLGQQLYYKTNA NVPAHRGIGIFVLTLAILQILAFFLRPSKDSKIRKYWNWYHSWTGRAALFFAAVNVVLGIHVGHAGTTWKVMYGLILAAILLAVISLEALYWLRRRRSDQ KNVEINYPPASNFQMNSMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	0	1
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	1.0	0.9939
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	2.4	0.9900
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10019325 [exp]	2.8	0.9884
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	3.7	0.9849
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	3.9	0.9891
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	5.5	0.9815
AT2G28315			Nucleotide/sugar transporter f...		Lus10041314 [exp]	5.9	0.9868
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10039610 [exp]	6.0	0.9766
AT5G37478			TPX2 (targeting protein for Xk...		Lus10020800 [exp]	6.0	0.9819
AT3G23200			Uncharacterised protein family...		Lus10022188 [exp]	6.6	0.9740

Compare expression of checked genes

Lus10012625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.