Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61740 1064 / 0 SDG14, ATX3 SET domain protein 14 (.1.2) AT5G53430 944 / 0 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 914 / 0 SDG16, ATX4 SET domain protein 16 (.1) AT2G31650 217 / 6e-58 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 217 / 7e-58 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G42400 120 / 3e-27 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT1G76710 98 / 4e-21 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT4G30860 93 / 2e-19 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT4G02020 94 / 3e-19 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) AT1G02580 92 / 6e-19 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010121 [exp] 1858 / 0 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10030262 [exp] 940 / 0 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10019026 [exp] 755 / 0 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10004012 [exp] 501 / 1e-165 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10005007 [exp] 458 / 1e-144 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10025508 [exp] 223 / 8e-60 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10026725 [exp] 221 / 6e-59 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025172 [exp] 131 / 1e-30 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 128 / 9e-30 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098400 [exp] 1275 / 0 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.002G170600 [exp] 1248 / 0 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.012G013900 [exp] 960 / 0 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 949 / 0 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.014G146300 [exp] 224 / 4e-60 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G232800 [exp] 220 / 1e-58 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G001000 [exp] 139 / 4e-33 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.018G023000 [exp] 138 / 8e-33 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.005G260100 [exp] 132 / 6e-31 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G195400 [exp] 105 / 3e-23 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain CL0049 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10012626 pacid=23161360 polypeptide=Lus10012626 locus=Lus10012626.g ID=Lus10012626.BGIv1.0 annot-version=v1.0 ATGAAAGCTGAGGTGCCCAAACTTAGACGGAGCAAGGTGGAAGAAACTTACAGCGGATATGAAGACGAAGAAGAAGAGGAAGAAGAAGAAGGTTACGCAT ACTCTTTTGTCCCCAAGAGGCAAAAGATAGACGGTTCGAATGGAAGACCCAGCTTATACAGCGAGGTGGATGACTTCAGTAGTGCTACTGGTTCTGGGTA TAGCGAGGGGTCCTACTTAGCAGGTCGTCAAATGGGTTCCAATTTGAACTCGTTGAAGAATCCGGCGCTGAAGAGGTCTCGGCCTCCTGCATTCAAAACG TCACGAGGAAGAACCTGCACGCTTCCTTCCAGGTTCAACGGCTCTGTTGTTGATTTGATGAAGAATGGGAATGGTAGATTCTACGACACTGATTCGAGCT CTGATAGTGATGATTTCGCGATGGAGAGTCTCGATGGCAACAGACGTAGATTGGGTTTCTTAAATCAGAGCCTTAGGTTAGTGAACGATCATTGTTCCCC GTTGGCGGGAAGGAACAGAGGAATCGGTGCTGTACAACTCAGCAACCACGACAGAAACTACGAGCGGCAACATATGAATTTAGATGGTTCCATGTTAGGA GCTATGGACGCTGGCCTCAGATTGGAACCTAGGTTTTCGCAGAAGTTCAAAACGGAAAAAATTGGTATTAGAAAGGACGTTTATAGGCCGGAGGACTTCG CTCTGGGAGATGTAGTCTGGGCCAGGAGCGGGAAGAGATACCCTTGGTGGCCAGCTGTTGTAATCGATCCCATACTACAAGCTCCTGAAGCTGTTCTTAG CTGTTGTGTTCCTGGCGCTTTATGTGTTATGTTTTATGGCTACTCTAAAAATGGAAGGCAAAGGGATTATGCATGGGTGAAACAAGGGATGATTTTCCCT TTTGCAGAATTTACTCACAGATTTCAGGGGCAGACTCAAATGTTCAAGTGCAAGATGAGTGACTTTCAGATGGCATTAGAGGAGGCAATCGTAGCTGGAA GTGGTTTCCTTGATGCAGATGGTAGCACTACAAAAACAGGCTTCAAGGACGCTCACTTGAAAGAATTCCAGCATGCCAGTACTACGAGTTACGATCAAGA TATTTCATATCAGGATGCACGTCACAAGGAGATGAGATGCTGCGACGACTGCAATCTAGTGTTGCCATGCCAAGTTGTAAAGAAACTGAATGGCTCAGTG TATCAAAATGAGCTTCTGTGTGATCATTGTGCCAAGTTAAGGAAAGCAAACCAGTATTGTGGAATATGCAATAAAATATGGCGCCATTCAGATCATGGAA ATTGGGTCTGTTGTGATGGTTGTAATGTTTGGATCCATGCCCAGTGTGACAACATATCTAAAAAACATCTAAAGGATCTGGAAACCAATCAATACTATTG CCCTGACTGCAGACTGAAGTTCAAAGTTCAGCCATTGGATTACAAGAGAAGGATGCTTCCTGTCAAGTCTACTCTGAGCAGTGAAGAAGCAATGCCACCT GAGAAAGTGACTGTTGTGTGCAATGGAATGGAGGGTACATATTTTCTGAAACATCATTCAATCGTATGCAGCTGTGGGTCTTGCGGGTCCCGGAAGCAAA CTCCTAGTGAATGGGAAAAGCACACTGGATGCAGAGCTAAGAAATGGAAGTATAGTGTCAAAGTGAAAGATACAATGTTGCCGCTGGAAAACTGGATTGC TGAACATAGTGTGCATTTCTCAGATCCTCTGGAATTAGATAAGCAGAAGCTGTTGACTTATCTGCAAGAAAAATACGAGCCTGTTTATGGTAAGTGGACA ACAGAAAGGTGTGCTGTTTGTAGATGGGTTGAAGATTGGGAGGATAACAAAATAATAATTTGCAACAGATGTCAAATTGCTGTCCACCAAGAATGTTACG GAGCAAGGAATGTTCAGGATTTCACTTCTTGGGTGTGTAGAGCATGTGAAACACCTGATATCGAGAAGGACTGTTGGGGTGCTCTAAAACCAACCGACGT TGATAATCTGTGGGTTCATATAACATGTGCTTGGTTTCGTCCTCAAGTTGGTTTCTTGAATCATGAGAAAATGGAACCTGCGACTGGTTTTTTCAGAATC CCTTCAGCTACCTTTCTAAAAAGCTGTGTTATTTGTAATCAGACTCATGGTTCCTGTACCCAGTGTTGCAAGTGTGCTACACACTTCCACACAATGTGTG CATATAGAGCTGGATATATCATGGAGGTACGTTGTGTGGTAAAGAATGGGAAGGAAGAGACCAGGAAGCAGATATATTGTGCTGTTCACAGGACCCCAAA CCCAGATTCAGTTGTAGCTGTGCGTACTCCTGCAGGGATATTTGCTGCCAAAAGCTTGCTACAAAATCAGAATGACTTCTTTCGGGGCTCAAGGCTGGTA TCATCTAGGAGAATTGAACTTCCCGAACCCTCAACCTCGAGGACTGATGAGTTGAAACCTCTTTCCTCTGCGAGATGTTGTGTTTTTAGAACATCAAACA ATAAGAAGTCATTTGTAGAGCCGGTATTTCACCACCCTGCAGGGACACGAAATCACTCTTTAGACGCAATAAACAGCTTTAACATCTCTGTGGACAAGGA AGATTCTAGGATATTTACTTCATTTAAAGACAGACTTTACCATTTACAGAAAACTGAAAAGTATCGAATCTGTTTTGGCAAATCTGGGATACATGGATGG GGCCTCTTTGCCCGGAGAAACATTCATGAGGGCGAAATGGTTACTGAATATCATGGTGAGCTGGTCAGGCAGATTGTTGCCGACCTGCGAGAGGCTAAAT ACAAGTCACAAGGCAAAGATTGCTATCTGTTCAAGATCGGCGAGGACATGGTAATTGATGCCACAAATAAAGGGAACATGGCGCGCCTAATAAACCATTC GTGCATGCCAAACTGCTTTGCAAGGATAATGAGCGTAGGTGCAGCAGAGAACCGGGTGGTGTTGATTGCAAAGAGAGACGTTTCGAGTGGCGAAGAGCTA ACGTATGACTACTTGTTCGAGACTGATGAGTCAGAAGAGCAGAGAGTGCCTTGCCTTTGTGGAACTCGGGAATGCCGAAAGTTTATGAACTAA
AA sequence Show only first row Show all	>Lus10012626 pacid=23161360 polypeptide=Lus10012626 locus=Lus10012626.g ID=Lus10012626.BGIv1.0 annot-version=v1.0 MKAEVPKLRRSKVEETYSGYEDEEEEEEEEGYAYSFVPKRQKIDGSNGRPSLYSEVDDFSSATGSGYSEGSYLAGRQMGSNLNSLKNPALKRSRPPAFKT SRGRTCTLPSRFNGSVVDLMKNGNGRFYDTDSSSDSDDFAMESLDGNRRRLGFLNQSLRLVNDHCSPLAGRNRGIGAVQLSNHDRNYERQHMNLDGSMLG AMDAGLRLEPRFSQKFKTEKIGIRKDVYRPEDFALGDVVWARSGKRYPWWPAVVIDPILQAPEAVLSCCVPGALCVMFYGYSKNGRQRDYAWVKQGMIFP FAEFTHRFQGQTQMFKCKMSDFQMALEEAIVAGSGFLDADGSTTKTGFKDAHLKEFQHASTTSYDQDISYQDARHKEMRCCDDCNLVLPCQVVKKLNGSV YQNELLCDHCAKLRKANQYCGICNKIWRHSDHGNWVCCDGCNVWIHAQCDNISKKHLKDLETNQYYCPDCRLKFKVQPLDYKRRMLPVKSTLSSEEAMPP EKVTVVCNGMEGTYFLKHHSIVCSCGSCGSRKQTPSEWEKHTGCRAKKWKYSVKVKDTMLPLENWIAEHSVHFSDPLELDKQKLLTYLQEKYEPVYGKWT TERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGARNVQDFTSWVCRACETPDIEKDCWGALKPTDVDNLWVHITCAWFRPQVGFLNHEKMEPATGFFRI PSATFLKSCVICNQTHGSCTQCCKCATHFHTMCAYRAGYIMEVRCVVKNGKEETRKQIYCAVHRTPNPDSVVAVRTPAGIFAAKSLLQNQNDFFRGSRLV SSRRIELPEPSTSRTDELKPLSSARCCVFRTSNNKKSFVEPVFHHPAGTRNHSLDAINSFNISVDKEDSRIFTSFKDRLYHLQKTEKYRICFGKSGIHGW GLFARRNIHEGEMVTEYHGELVRQIVADLREAKYKSQGKDCYLFKIGEDMVIDATNKGNMARLINHSCMPNCFARIMSVGAAENRVVLIAKRDVSSGEEL TYDYLFETDESEEQRVPCLCGTRECRKFMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10012626 [exp]	0	1
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Lus10000969 [exp]	2.4	0.8935
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10023123 [exp]	2.8	0.8556
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Lus10036447 [exp]	8.3	0.8307
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10011850 [exp]	14.0	0.8614
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	14.4	0.8480
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10023840 [exp]	16.2	0.8712
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10028458 [exp]	17.9	0.8757
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	19.0	0.8577
AT4G31390			Protein kinase superfamily pro...		Lus10026952 [exp]	22.7	0.7774
AT5G42390		SPP	stromal processing peptidase, ...		Lus10041263 [exp]	23.5	0.8307

Compare expression of checked genes

Lus10012626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.