Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36000 337 / 5e-115 unknown protein AT3G61730 333 / 1e-113 RMF reduced male fertility (.1) AT3G62500 142 / 3e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010122 [exp] 619 / 0 AT5G36000 271 / 2e-88 unknown protein Lus10030262 [exp] 417 / 3e-137 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10004013 [exp] 384 / 3e-135 AT5G36000 271 / 3e-90 unknown protein Lus10035747 [exp] 135 / 2e-38 AT5G36000 97 / 5e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098300 [exp] 409 / 4e-144 AT5G36000 369 / 5e-128 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012627 pacid=23161387 polypeptide=Lus10012627 locus=Lus10012627.g ID=Lus10012627.BGIv1.0 annot-version=v1.0 ATGAGAACAGAGAACGCCGGGAAAAGATTGCGCAGAGAACGATCCATCAGCAGTTGCAAGTCTCCTCGTCTCTCTTATCGAGCTTCTCCTAGCTCCTTCA ACTTTTACGAATTGGATGCTTGGACTGAGATCGCCAAATTCTTGGACGGCAAATCAATGGTGAAGCTCGCATTGACTTGCCGGTGGTTCCACGGCGTCAT TATGCAAAACAGCGTATGGAAGTACGCTTGCCTGAGCCACTTTCAGGTTCCAGCTCCAGATCGTACGGAATTCAAATGGATTGAACTCTACGTTTCAGCA ATCAGTAATGCTCTCGCTCCTCTATTAAAATCCTCTGCATCTATGGTTTCCATTCGTGGAAACCATTCTTATACATTTCGTGAGAAGGAGAAACATCTTG ACTGGATGAGGATCGGTGCCTTCTCCATAGACTCGCCATCAGTAATCCTTACCCAGAGACTTAACTTACCTTTGAAGATCATGAAACGTGAAACTCTGCA AAATATGCTGAAATCCACCGGTGCTTGTTTGGTAAATGGCCTCAGAAAAGGAATCTGGATAGCTGATTTACAGCTTGTCCGTTGCCCTGTTTGCGAACTC CAAACTTGCGAGGGAACAATGCAGACACTTGATGCGAGACATATTGAGTTGTTCCTAAGTGAAGGATACCAGAACGGAAGTTGGTTGTATGAGCAGATTG GATCTCATAAAGTTAAAGGCCAAGAGCATGCAGCGTCAGCGGCCATGTTGGACCTCAAGCACATCACAGACCGTCAAACCGCTGCGGTGTTCAACCTGAA ACTATGGGGCGGAACACCCAAGGATTTCCAGCCAAAAGCTATGATCACTTACCATGCCACTGCAATCAGCACCCTCTTACAAGCCAATCAAGGATTGGTT TCAAAATTCTACGTGATGAGAGCTGGAACTGGAGGAGAAGTTGTTTCCATCAGAATCTCTCAGCAGCTCCTGTAG
AA sequence Show only first row Show all	>Lus10012627 pacid=23161387 polypeptide=Lus10012627 locus=Lus10012627.g ID=Lus10012627.BGIv1.0 annot-version=v1.0 MRTENAGKRLRRERSISSCKSPRLSYRASPSSFNFYELDAWTEIAKFLDGKSMVKLALTCRWFHGVIMQNSVWKYACLSHFQVPAPDRTEFKWIELYVSA ISNALAPLLKSSASMVSIRGNHSYTFREKEKHLDWMRIGAFSIDSPSVILTQRLNLPLKIMKRETLQNMLKSTGACLVNGLRKGIWIADLQLVRCPVCEL QTCEGTMQTLDARHIELFLSEGYQNGSWLYEQIGSHKVKGQEHAASAAMLDLKHITDRQTAAVFNLKLWGGTPKDFQPKAMITYHATAISTLLQANQGLV SKFYVMRAGTGGEVVSIRISQQLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36000			unknown protein		Lus10012627 [exp]	0	1
AT5G18910			Protein kinase superfamily pro...		Lus10034000 [exp]	1.4	0.8405
AT1G12950		RSH2	root hair specific 2 (.1)		Lus10036853 [exp]	1.4	0.8470
					Lus10020595 [exp]	10.6	0.7733
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	11.6	0.7976
AT5G42905			Polynucleotidyl transferase, r...		Lus10034950 [exp]	15.1	0.7719
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	17.3	0.7702
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	18.5	0.7702
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	19.7	0.7702
					Lus10023200 [exp]	20.4	0.7210
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10040043 [exp]	20.5	0.7702

Compare expression of checked genes

Lus10012627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.