Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53110 242 / 1e-76 RING/U-box superfamily protein (.1) AT2G25410 236 / 3e-74 RING/U-box superfamily protein (.1) AT2G46495 233 / 2e-73 RING/U-box superfamily protein (.1) AT2G46494 222 / 3e-69 RING/U-box superfamily protein (.1) AT1G28040 193 / 9e-59 RING/U-box superfamily protein (.1) AT2G25409 115 / 1e-30 unknown protein AT5G36001 111 / 1e-28 RING/U-box superfamily protein (.1.2) AT2G46493 108 / 9e-28 RING/U-box superfamily protein (.1) AT5G07040 104 / 9e-27 RING/U-box superfamily protein (.1) AT2G35910 91 / 5e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010123 [exp] 251 / 9e-83 AT5G53110 114 / 1e-30 RING/U-box superfamily protein (.1) Lus10019018 [exp] 197 / 3e-59 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10032382 [exp] 172 / 2e-49 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10003401 [exp] 129 / 2e-34 AT5G53110 187 / 5e-57 RING/U-box superfamily protein (.1) Lus10010124 [exp] 108 / 7e-29 AT2G25409 86 / 1e-21 unknown protein Lus10003400 [exp] 108 / 2e-28 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10005389 [exp] 108 / 3e-28 AT5G07040 154 / 9e-49 RING/U-box superfamily protein (.1) Lus10023086 [exp] 114 / 4e-28 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10024124 [exp] 105 / 7e-27 AT5G07040 190 / 2e-62 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G170300 [exp] 336 / 2e-113 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 324 / 9e-109 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 229 / 1e-71 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.012G011500 [exp] 228 / 2e-71 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.001G091700 [exp] 175 / 7e-51 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.003G139900 [exp] 163 / 2e-46 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.003G192700 [exp] 117 / 4e-31 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.001G032300 [exp] 111 / 4e-29 AT5G07040 143 / 5e-44 RING/U-box superfamily protein (.1) Potri.001G154500 [exp] 107 / 9e-27 AT2G25410 121 / 5e-32 RING/U-box superfamily protein (.1) Potri.015G018200 [exp] 102 / 2e-23 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10012628 pacid=23161339 polypeptide=Lus10012628 locus=Lus10012628.g ID=Lus10012628.BGIv1.0 annot-version=v1.0 ATGGCAATCTCAGGAGCACTTGTCCTTATCCTAATCCTCCTGATCAACAACAACATTTGTCCTTGTTCTTCTGCTTCTTCCTCCACCTCATCATCACCCC TACAACCAAAAGAAGAAAACTGCCAAACTTCAAGATGCAGCGCCGGCAGCGTGGCTGTACGGTTCCCTTTCCGCCTCACCGGCCGGCAGCCACGGGACTG CGGTTACAGCCCCAAGTTCGACCTCGGGTGCAACAAACAGAGCCTAACTACCCTCCAACTCCCTTTCTCGGGTGACTTCCTAGTCGACAGCATCAACTAC CTGACCCGACAGATATGGATCAACGACCCGGATAACTGCCTCCCCAAACGCCTCCTCACATTGGACCTCTCCCTTTCACCTTTCTCCGCCGCCTTTGTCC GGAACTACACTTTCCTCAGCTGCCCTGCTCAGCTGGTGAGGTCCGATTACTCGAAAATTGGTTGCCTCAGCAACTCCACCACCGCCGTTTTGGCCACCTC TTCCCCCGCCTTCGTCGACTCCTTGACCTCGACCTCTTCCTGCGTGGTTTCAGCGACGGTGAAGGTCCCGGTTTCGTGGCCGGTTCAGCTTAGCGAAGGG TCGTCGACAGCGTTGCACGACGATTTGATGTTGATATGGGATTCTCCCGACTGCTTCGACTGTGAATCGCGCCGCGGCTTCTGTCGGTTCAGGAATAACG CTACTCGAGAGATTGGCTGCTCAGGTGGGTCGTCTGCATCTGGTTTGAAGGTATTCAAGGTTATCTGTTTATCCCTCGCCATTCCAGCAGCAGCTTGTGC TTGTGGGATTGCATGCTTCGCCTGTTTCCTTCAAAACGGACGCCGCCAATCTAACAACAACATCATCACCCCAACGGCAACAGTGACGCCTGAACCGGCG ACAGTGCTTACGTTGGGATTGGACGAATCCACCATCGAATCATATGAGAAAGTGGTGTTGGGAGAAAGCAAGCGAGTGCCCGGACCAAACGACACCGTTT GCGCCATCTGCTTGACGGAGTATTGCGGGAAGGACACCATCAGATTAATACCAGAATGTAAGCACTGCTTCCATGCTGATTGCATCGACGAGTGGCTTCG AATGAACACTAGCTGCCCTGTCTGCCGAAACTGCCCTTCCTCCCCCCATCCAACACCACTAGAGGCTGTACAGACAATCTAG
AA sequence Show only first row Show all	>Lus10012628 pacid=23161339 polypeptide=Lus10012628 locus=Lus10012628.g ID=Lus10012628.BGIv1.0 annot-version=v1.0 MAISGALVLILILLINNNICPCSSASSSTSSSPLQPKEENCQTSRCSAGSVAVRFPFRLTGRQPRDCGYSPKFDLGCNKQSLTTLQLPFSGDFLVDSINY LTRQIWINDPDNCLPKRLLTLDLSLSPFSAAFVRNYTFLSCPAQLVRSDYSKIGCLSNSTTAVLATSSPAFVDSLTSTSSCVVSATVKVPVSWPVQLSEG SSTALHDDLMLIWDSPDCFDCESRRGFCRFRNNATREIGCSGGSSASGLKVFKVICLSLAIPAAACACGIACFACFLQNGRRQSNNNIITPTATVTPEPA TVLTLGLDESTIESYEKVVLGESKRVPGPNDTVCAICLTEYCGKDTIRLIPECKHCFHADCIDEWLRMNTSCPVCRNCPSSPHPTPLEAVQTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53110			RING/U-box superfamily protein...		Lus10012628 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10041667 [exp]	5.5	0.8658
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10024363 [exp]	10.8	0.8882
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	19.3	0.8839
AT1G01490			Heavy metal transport/detoxifi...		Lus10027523 [exp]	20.0	0.8772
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	20.4	0.8766
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	20.8	0.8726
AT5G12340			unknown protein		Lus10009698 [exp]	20.9	0.8548
AT2G48030			DNAse I-like superfamily prote...		Lus10042675 [exp]	23.7	0.8651
AT2G41480			Peroxidase superfamily protein...		Lus10020422 [exp]	25.6	0.8733
AT5G39160			RmlC-like cupins superfamily p...		Lus10042517 [exp]	28.6	0.8564

Compare expression of checked genes

Lus10012628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.