Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01000 202 / 3e-60 Ubiquitin-like superfamily protein (.1) AT3G06455 86 / 2e-18 ubiquitin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010125 [exp] 571 / 0 AT4G01000 333 / 6e-111 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G170200 [exp] 233 / 9e-72 AT4G01000 125 / 2e-31 Ubiquitin-like superfamily protein (.1) Potri.014G098100 [exp] 232 / 3e-71 AT4G01000 135 / 5e-35 Ubiquitin-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012629 pacid=23161363 polypeptide=Lus10012629 locus=Lus10012629.g ID=Lus10012629.BGIv1.0 annot-version=v1.0 ATGGAAGAACACCGCGTGGCTGCGGATCGGACGGTGCTCCAGATCTTTGCAAGACTTCTCGACGGGACGACAGCGACCCTACGATTCCCTGCGCCACAAG CATGTACTCATGAAATCAAGCGGCGAATATTCGATATCACCAGAATCCCCGTTCAATTACAGGGGATTGCCAGCGGCGGCCGCCAGCTCGATGACGACTC CGTTGTTTCTACTCCGGAGTGCAACGTCCACCTCTTGCTCAGCCTCCTTGGAGGGAAGGGAGGTTTCGGCTCGCTTCTCCGTGGCGCAGCCACCAAAGCC GGACAGAAGAAGACGAACAATTTCGACGCCTGCAGAGATATGAGCGGGAGAAGGCTGCGCCATGTGAATGCTGAGAAGAGGTTGGAGGAGTGGAAAGAAG GCGAGGAAGAGAGGAAGTTAGAGAAGATTGCCCAAGATTTTCTCAAGAAGAAAGCGAAGAAAGGTGTAAAAGGTACTGGTGATGGAGAAGCCGCAAAGTA TGTGGCCAAGTATAGGGAGGAATCTGCTAAGTGTGTAGCGGAAGTTGAGGAAGCCGTGAGGGAGGCTTTTAGTAACGGGAGCGGGAAAAGGAAGGGCAAG TTTCCAATGAATGCTGTGGAAGCCAAGAAGTCGAAGATTTGGCTGGGCAAGCAGAAATTGGAAGAAAGCGATGGAGAAGATACAGAAGATGATAGCGATA GTGACAACGAGGATAAGGAAACTGAAAAGTCCGTTATTTTGAATGATGGGAGTAACTCAGACACAGTTTCTGACGGCAAGCGAACTGGAGAATGCTCTGC TGATGCTTCTTGTGAGAGGAGTGGTTCAGAGGAAGAAGTGAAAGACGCTGCTGAGGAGCCAACCTGTGAGCCAAGTTCTTGTACAGATGTTATCAACGAT TACATGCACATCGTTGCTGAACATCAGACTTCCCTGGAGGTGGTAGCGCCTTGCTCAGAGGCAAAGGCTTCTGGAATTGATAAGATAACTGAAACCCAAG AGAATTTAAGTTGCCAAAATGATGAATCTGGTGCAAAGAGTCCAGCTACTGGTGCAGGAAATGACCCAAAATCAGATGCCGAGGAAGAAAAAGCAGCAGA GGTGGTTAATGATTCTGATTTGAAGAAGCCGCTGAACTTTGAAGACTTCAATTCACCTTCAGATCTAGAGGTAGTTGGTATGGAAAAGTTGAAGTGGGAA TTGCAGGAGCGGGGGTTGAAATGCGGAGGAACTCTTAAAGAGAGAGCTGCAAGGCTTTTCCTCCTGAAATCAACACCTTTGGATAAGCTACCTAAGAAGC TCCTCGCCAAGAAATGA
AA sequence Show only first row Show all	>Lus10012629 pacid=23161363 polypeptide=Lus10012629 locus=Lus10012629.g ID=Lus10012629.BGIv1.0 annot-version=v1.0 MEEHRVAADRTVLQIFARLLDGTTATLRFPAPQACTHEIKRRIFDITRIPVQLQGIASGGRQLDDDSVVSTPECNVHLLLSLLGGKGGFGSLLRGAATKA GQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKEGEEERKLEKIAQDFLKKKAKKGVKGTGDGEAAKYVAKYREESAKCVAEVEEAVREAFSNGSGKRKGK FPMNAVEAKKSKIWLGKQKLEESDGEDTEDDSDSDNEDKETEKSVILNDGSNSDTVSDGKRTGECSADASCERSGSEEEVKDAAEEPTCEPSSCTDVIND YMHIVAEHQTSLEVVAPCSEAKASGIDKITETQENLSCQNDESGAKSPATGAGNDPKSDAEEEKAAEVVNDSDLKKPLNFEDFNSPSDLEVVGMEKLKWE LQERGLKCGGTLKERAARLFLLKSTPLDKLPKKLLAKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	0	1
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	4.0	0.8974
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	6.0	0.8766
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	12.0	0.8498
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	13.4	0.8210
AT1G51550			Kelch repeat-containing F-box ...		Lus10034827 [exp]	13.4	0.8646
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	14.7	0.8665
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	16.5	0.8302
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	16.5	0.8637
AT3G14830			unknown protein		Lus10005552 [exp]	17.4	0.8691
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10020771 [exp]	17.5	0.8564

Compare expression of checked genes

Lus10012629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.