Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61710 484 / 3e-171 AtBECLIN1, ATATG6 BECLIN1, AUTOPHAGY 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010126 [exp] 657 / 0 AT3G61710 749 / 0.0 BECLIN1, AUTOPHAGY 6 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G170100 [exp] 554 / 0 AT3G61710 771 / 0.0 BECLIN1, AUTOPHAGY 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04111 [flax] [poplar] APG6 Apg6 BARA domain
Representative CDS sequence Show only first row Show all	>Lus10012631 pacid=23161367 polypeptide=Lus10012631 locus=Lus10012631.g ID=Lus10012631.BGIv1.0 annot-version=v1.0 ATGAGCGATAAGGGCGGGACTCTTCAAGTTCAGGTGGATCCCAACCTTCCACGATGGATGTGCCAGAACTGCCGTCACTCTCTTTGTATCGTCGGAGCTG ATTCCTTCGCTGACAAGTTCTTAAACGATTCCTCTTTCCGCTCCGTTCATGGAGCTAACAGTGTGCTGGGATCAACCCGTATGGATAATTCGTTTGTCGT ATTGTCAAAGCAAAAGCCCCAAGCACAAGGAATCCCTCCACGTCCACGAGGTGGAGGAACTGGAGTTAGTGGCGTTCAGCCTGAGACAGGCCAGTCTGGT AAGACAATGGATGAATCATTTGTTGTCGTGTATAAGTCTGAGCCTGCTTCTGATGGAGGTGCTGGAGGGCCTATGCCTTCCCTAGAAGGAGGATCCAATG GTCAGCTACATCCCAACAATGCCGGATTTCATTCCACCATCTCGGTTTTAAAACGAGCATTTGAGATTGCTACAACCCAGACGCAGGTTGAGCAACCAAT GTGCCTTGAATGCATGAGAGTGTTGTCTGATAAACTCGATAAGGAGGTCGAAGATGTAAATAGGGACATTGAAGCATATGAAGCCTGCCTCCAGCGTCTA GAAGGAGAGCCACGTGATGTTCTCAGCGAGGCTGATTTTCTGAAGGAGAAACTAAAGATTGAGGAGGAAGAAAGAAAACTTGAAGCTACAATTTCGGAAA TCGAAAAGCAAAATGCAGAAGTTAATGACGAGCTGAAGGAGTTAGAGTTAAAATCTGTCCGTTTTAAAGATTTGGAGGAACGGTACTGGCAGGAGTTCAA TAATTTTCAGTTTCAGCTAATATCATATCAGGAAGAGAGAGATGCAATTCTGGCAAAGATTGAGGTTTCTCAGGCACACTTGGAGTTGTTGAAGCAAACC AATGTGCTGAGTGATGCTTTCCCCATTCATCATGACGGAGAGTTTGGAACTATAAACAATTTCCGGCTGGGAAGACTTCCTAAAATTCCGGTTGAATGGG ATGAGATCAATGCTGCATGGGGCCAAGCTTGTCTTCTCCTCCATACAATGTGTCAATACTTCAAGCCAAAGTTTCCGTATCCTTTTGTCCTAAAGCCAAC TTGCTGTTTCTTGTACAGTCATTTTGATCATTTTGAGCTGGTATGCTTGTATGTGATAAGAAGCTTCATCATACTAAATGAAGCTCCGGTTGCTGGCTAT ACTTGA
AA sequence Show only first row Show all	>Lus10012631 pacid=23161367 polypeptide=Lus10012631 locus=Lus10012631.g ID=Lus10012631.BGIv1.0 annot-version=v1.0 MSDKGGTLQVQVDPNLPRWMCQNCRHSLCIVGADSFADKFLNDSSFRSVHGANSVLGSTRMDNSFVVLSKQKPQAQGIPPRPRGGGTGVSGVQPETGQSG KTMDESFVVVYKSEPASDGGAGGPMPSLEGGSNGQLHPNNAGFHSTISVLKRAFEIATTQTQVEQPMCLECMRVLSDKLDKEVEDVNRDIEAYEACLQRL EGEPRDVLSEADFLKEKLKIEEEERKLEATISEIEKQNAEVNDELKELELKSVRFKDLEERYWQEFNNFQFQLISYQEERDAILAKIEVSQAHLELLKQT NVLSDAFPIHHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFKPKFPYPFVLKPTCCFLYSHFDHFELVCLYVIRSFIILNEAPVAGY T

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012631 [exp]	0	1
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	2.0	0.8349
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	3.7	0.8314
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	4.2	0.8224
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	6.0	0.7847
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	7.0	0.7771
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	9.8	0.7727
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	13.2	0.7832
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	14.5	0.7622
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	18.8	0.7443
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	19.5	0.7370

Compare expression of checked genes

Lus10012631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.