Plant FIBer expression Database

Lus10012632 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61710 226 / 1e-72 AtBECLIN1, ATATG6 BECLIN1, AUTOPHAGY 6 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010126
[exp]
312 / 4e-106 AT3G61710 749 / 0.0 BECLIN1, AUTOPHAGY 6 (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G170100
[exp]
268 / 5e-89 AT3G61710 771 / 0.0 BECLIN1, AUTOPHAGY 6 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04111 APG6 Apg6 BARA domain
Representative CDS sequence
>Lus10012632 pacid=23161365 polypeptide=Lus10012632 locus=Lus10012632.g ID=Lus10012632.BGIv1.0 annot-version=v1.0
ATGGTTCCTATGGGGAGCTACCCACGCATTATGGACAGCAATAACAATTCATATGATCTGTTTGGTCCAGTCAACTTGTTTTGGAGCACTCGCTATGATA
AAGCGATGACATTGTTCCTAACATGCCTCAAGGATTTTGCCGAGTTTGCATATCTGAAGGATCAAGAAAACAACATTCCACTGGAGAAACGGTTCAAGCT
TCCATATAAGATTGAGAATGATAAAGTGGAAAGCTACTCAATCACTCAGAGCTTCAATAAACAAGAGAACTGGACAAAAGCTCTAAAGTACACGTTGTGC
AATCTGAAATGGGCTCTCTACTGGTTCATTGGTAACACGAACTTCCAACCTATGACCACAATGGTATCTCCACGAGTAGAAGTTGCAGGGGTAGGGTCTT
TATATGCAAAGCATCGTGGGATAGAGTCGAAGAAGGAATCTCGAAACAAATGA
AA sequence
>Lus10012632 pacid=23161365 polypeptide=Lus10012632 locus=Lus10012632.g ID=Lus10012632.BGIv1.0 annot-version=v1.0
MVPMGSYPRIMDSNNNSYDLFGPVNLFWSTRYDKAMTLFLTCLKDFAEFAYLKDQENNIPLEKRFKLPYKIENDKVESYSITQSFNKQENWTKALKYTLC
NLKWALYWFIGNTNFQPMTTMVSPRVEVAGVGSLYAKHRGIESKKESRNK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61710 AtBECLIN1, ATAT... BECLIN1, AUTOPHAGY 6 (.1.2.3) Lus10012632
[exp]
0 1
AT1G12600 UDP-N-acetylglucosamine (UAA) ... Lus10029605
[exp]
2.0 0.9356
AT4G28400 Protein phosphatase 2C family ... Lus10018618
[exp]
2.0 0.9302
AT5G09680 RLF reduced lateral root formation... Lus10039342
[exp]
2.6 0.9442
AT5G15730 CRLK2, AtCRLK2 calcium/calmodulin-regulated r... Lus10008540
[exp]
5.7 0.9202
Lus10015401
[exp]
6.0 0.9145
AT3G56770 bHLH bHLH107 basic helix-loop-helix (bHLH) ... Lus10038306
[exp]
7.5 0.9068
AT2G21620 RD2 Adenine nucleotide alpha hydro... Lus10042317
[exp]
8.1 0.9262
AT1G65520 PEC11, ECHIC, A... "delta\(3\), delta\(2\)-enoyl ... Lus10005158
[exp]
9.0 0.9336
AT5G53390 O-acyltransferase (WSD1-like) ... Lus10014075
[exp]
10.1 0.9259
AT3G57550 GK-2, AGK2 GUANYLATE KINAS 2, guanylate k... Lus10011328
[exp]
12.4 0.8985

Lus10012632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.