Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08610 718 / 0 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63630 715 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 696 / 0 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT1G63250 545 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 536 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 248 / 4e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 248 / 1e-74 DEA(D/H)-box RNA helicase family protein (.1) AT5G54910 207 / 1e-58 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 202 / 1e-57 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G05450 200 / 5e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010127 [exp] 959 / 0 AT5G08610 639 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030265 [exp] 769 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004017 [exp] 764 / 0 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043479 [exp] 553 / 0 AT1G63250 767 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10034109 [exp] 302 / 2e-99 AT1G63250 444 / 5e-152 DEA(D/H)-box RNA helicase family protein (.1) Lus10034110 [exp] 251 / 5e-78 AT2G07750 330 / 7e-106 DEA(D/H)-box RNA helicase family protein (.1) Lus10009616 [exp] 247 / 4e-74 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 246 / 4e-74 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 244 / 4e-73 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G169800 [exp] 752 / 0 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 744 / 0 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G124100 [exp] 551 / 0 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G107300 [exp] 539 / 0 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.009G045300 [exp] 252 / 2e-76 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 250 / 1e-75 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 216 / 1e-61 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 204 / 8e-60 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G347100 [exp] 199 / 2e-55 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.007G068800 [exp] 192 / 4e-55 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10012633 pacid=23161381 polypeptide=Lus10012633 locus=Lus10012633.g ID=Lus10012633.BGIv1.0 annot-version=v1.0 ATGGGTCGTAGAGGAAAGGGTGGTGCCGGAGGGAAAGGCAAGGAAGACGGACAAATGCAGAGATTCTCCGCCAAAAGAAAAGCCGAGAGCAATAATGGTG GTGAGTCTGCCCCGAAGAAGAATCGTGGTTCTTCTCCCTGGGGATTAGAAAACGAGGATCAGGCGAAATCAACTCCTGATCCTGGAAACTCGGATTCTTA TCTGAGTCAAACTAGATTTGATCAGTGTTCATTATCTCCATTGTCATTGAAAGCGATCAAAGATGTTGGATATGAGAAGATGACTGTGGTCCAGGAAGCA ACATTCCCCTTAATATTTAAAGGAAAGGACGTTCTAGCTAAAGCCAAAACAGGCACTGGAAAGACTTTTGCATTTCTGCTTCCATCTATTGAAGTCATTG TGAAATCAGCTCCTGGAGAACGTGATAACAAACGATCTCCTATTGTTGTTCTTGTCATATGTCCAACAAGGGAGCTTGCGACACAGGCTGCAGCAGAAGC GAACAAACTACTAAAGTACCATCCTTCTCTTGGTGTTCAATATGTGATAGGCGGTACAAGCCTTAATCAGGAACAGAGAAGCCTGCAATCTAAACCCTGC CAAATCCTTATTGCTACACCTGGGAGACTTAATGACCATATTGAGAATACATCTGGATTCGCAACAAGAGTTAAGAGTGTAAAAGTCCTTGTTCTTGATG AAGCTGATTGTTTACTTGACATGGGATTCCGTAGAGACCTTGACAAAATAATAGCTGCTCTTCCGAAACAACGCCAAACACTTCTGTTTTCAGCAACAGT CCCTGAACAGGTCCGTCAAATGTCTCATGTTGCTTTGAAGAGTGATCATGTATTTGTTAATACCGTTGAAGAGGGATCTGAGCAGACACATGCACGGGTC AGACAAACTCATATGGTTGCTCCAATGGATAAGCACTTTCCTCTTGTGTATGCGCTCTTAAATGATCACATTGCAGATGATTCTGATTACAAGGTTCTTG TCTTTTGTACCACTGCCCGGTTGACAGGACTTGTTTCAGAGTATCTTGGTAAGTTAAAGCTAAATGTCCAAGTGATCCATTCCAGGAAGTCTCAAAGTAA CAGGACTCGTGTTTCTGATTTGTTCCGGAAGTCCAAGGGCATGATACTTGTAACTTCCGATGTATCAGCACGCGGTGTTGATTACCCTGATGTTACTCTT GTCATACAGTTGGGTTTGCCGGCCAGTAGAGAACAGTACATCCACAGGCTTGGCAGAACAGGGCGAAAGGGGAAAGAAGGACAAGGAATACTCTTGCTTG CGCCGTGGGAGCAATTCTTTCTATTTAGAGTGAAGGATTTGCCGATAACGGAAGCTCAATTGCCACCGTTAGACCCACAGACAACCAAGAAGGTTGAAGT GGCGATGTCCCAAGTGGATAAGCAGCACAAAGAAGCAGCATATCAAGCATGGCTGGGGTATTACAACTCGGACAAGGAGACAAGAAAGGACAAGAAGAAG CTTGTGGAGTATGCTAACGAGTTCAGTAGGATTATGGGGTTGAAGGAACCCCCTATCATTCCCAAGAGGATCCTTGCTAAGATGAGTCTCAACAATGTCG CTGGTTTGCGCTCTGGTTAG
AA sequence Show only first row Show all	>Lus10012633 pacid=23161381 polypeptide=Lus10012633 locus=Lus10012633.g ID=Lus10012633.BGIv1.0 annot-version=v1.0 MGRRGKGGAGGKGKEDGQMQRFSAKRKAESNNGGESAPKKNRGSSPWGLENEDQAKSTPDPGNSDSYLSQTRFDQCSLSPLSLKAIKDVGYEKMTVVQEA TFPLIFKGKDVLAKAKTGTGKTFAFLLPSIEVIVKSAPGERDNKRSPIVVLVICPTRELATQAAAEANKLLKYHPSLGVQYVIGGTSLNQEQRSLQSKPC QILIATPGRLNDHIENTSGFATRVKSVKVLVLDEADCLLDMGFRRDLDKIIAALPKQRQTLLFSATVPEQVRQMSHVALKSDHVFVNTVEEGSEQTHARV RQTHMVAPMDKHFPLVYALLNDHIADDSDYKVLVFCTTARLTGLVSEYLGKLKLNVQVIHSRKSQSNRTRVSDLFRKSKGMILVTSDVSARGVDYPDVTL VIQLGLPASREQYIHRLGRTGRKGKEGQGILLLAPWEQFFLFRVKDLPITEAQLPPLDPQTTKKVEVAMSQVDKQHKEAAYQAWLGYYNSDKETRKDKKK LVEYANEFSRIMGLKEPPIIPKRILAKMSLNNVAGLRSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	0	1
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	1.7	0.9605
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	2.0	0.9563
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	3.0	0.9414
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	3.9	0.9527
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10021907 [exp]	4.5	0.9410
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	4.9	0.9502
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	8.5	0.9514
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	10.2	0.9508
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	12.0	0.9470
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	12.7	0.9475

Compare expression of checked genes

Lus10012633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.