Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41761 84 / 2e-22 unknown protein AT3G55570 81 / 6e-21 unknown protein AT3G09950 72 / 1e-17 unknown protein AT3G11405 66 / 5e-15 unknown protein AT5G55620 63 / 3e-14 unknown protein AT5G06010 51 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000541 [exp] 87 / 1e-23 AT5G41761 96 / 2e-27 unknown protein Lus10017552 [exp] 86 / 2e-22 AT5G41761 94 / 2e-25 unknown protein Lus10038794 [exp] 78 / 6e-20 AT3G09950 82 / 6e-22 unknown protein Lus10039065 [exp] 76 / 2e-19 AT3G09950 85 / 6e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G095100 [exp] 95 / 4e-27 AT5G41761 92 / 3e-26 unknown protein Potri.014G095000 [exp] 95 / 5e-27 AT5G41761 97 / 1e-27 unknown protein Potri.002G167900 [exp] 95 / 5e-27 AT5G41761 86 / 1e-23 unknown protein Potri.003G136700 [exp] 94 / 2e-26 AT5G41761 102 / 4e-30 unknown protein Potri.012G031900 [exp] 87 / 4e-24 AT5G41761 88 / 2e-24 unknown protein Potri.006G017700 [exp] 85 / 9e-23 AT5G41761 83 / 6e-22 unknown protein Potri.001G313700 [exp] 80 / 3e-21 AT3G55570 93 / 2e-26 unknown protein Potri.001G313801 [exp] 71 / 4e-17 AT3G55570 85 / 1e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012634 pacid=23161354 polypeptide=Lus10012634 locus=Lus10012634.g ID=Lus10012634.BGIv1.0 annot-version=v1.0 ATGAACGGTGCCACGTGTACGGTGGCTGATGCGCCGGCAGGATCTCCTAATAAGCCGACTACGGCAGGGTCTCCCAACGTTGGTAAGGAAAGATCAAGCG GTGGCAGGTCGGGAGAAGCTCTTGATCGGAATCCTTCAGTATTTCAGATGCCAGTACATTACCCTCGTTACAGCCGAGCAGAGTACGAGACGATGGCCGA GTGGAAGCTTGATTGCTTGCTTAAAGCCTACGGCTTGCCCGTCGCCGGAGATGTTAAGAATAAGCGCAGCTTTGCAATCGGAGCTTTTCTTTGGCCTCTC AGTTACTGA
AA sequence Show only first row Show all	>Lus10012634 pacid=23161354 polypeptide=Lus10012634 locus=Lus10012634.g ID=Lus10012634.BGIv1.0 annot-version=v1.0 MNGATCTVADAPAGSPNKPTTAGSPNVGKERSSGGRSGEALDRNPSVFQMPVHYPRYSRAEYETMAEWKLDCLLKAYGLPVAGDVKNKRSFAIGAFLWPL SY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41761			unknown protein		Lus10012634 [exp]	0	1
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	3.0	0.9582
AT1G60010			unknown protein		Lus10030835 [exp]	3.6	0.9626
AT1G16350			Aldolase-type TIM barrel famil...		Lus10036443 [exp]	4.5	0.9603
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10010747 [exp]	7.2	0.9427
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	11.0	0.9561
AT2G19900		ATNADP-ME1	Arabidopsis thaliana NADP-mali...		Lus10012964 [exp]	12.4	0.9414
					Lus10000300 [exp]	18.0	0.9233
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	18.1	0.9465
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	18.2	0.9501
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004519 [exp]	21.6	0.9183

Compare expression of checked genes

Lus10012634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.