Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46320 405 / 6e-141 Mitochondrial substrate carrier family protein (.1.2.3) AT4G27940 380 / 2e-130 ATMTM1 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) AT3G53940 69 / 1e-12 Mitochondrial substrate carrier family protein (.1) AT3G55640 68 / 1e-12 Mitochondrial substrate carrier family protein (.1) AT2G37890 64 / 5e-11 Mitochondrial substrate carrier family protein (.1) AT5G46800 63 / 6e-11 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT5G48970 63 / 7e-11 Mitochondrial substrate carrier family protein (.1) AT4G26180 61 / 3e-10 Mitochondrial substrate carrier family protein (.1) AT5G56450 56 / 1e-08 PM-ANT Mitochondrial substrate carrier family protein (.1) AT4G32400 54 / 1e-07 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038825 [exp] 382 / 5e-131 AT4G27940 538 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Lus10014940 [exp] 381 / 7e-131 AT4G27940 536 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Lus10004689 [exp] 69 / 1e-12 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10040709 [exp] 67 / 2e-12 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10013527 [exp] 62 / 2e-10 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1) Lus10032690 [exp] 62 / 2e-10 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 61 / 4e-10 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 61 / 4e-10 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 61 / 5e-10 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167700 [exp] 461 / 2e-162 AT2G46320 424 / 3e-148 Mitochondrial substrate carrier family protein (.1.2.3) Potri.015G022700 [exp] 403 / 2e-139 AT4G27940 514 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Potri.012G032100 [exp] 402 / 5e-139 AT4G27940 522 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Potri.008G060900 [exp] 68 / 2e-12 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 67 / 3e-12 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.008G210000 [exp] 64 / 5e-11 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 63 / 9e-11 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 62 / 2e-10 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.005G197200 [exp] 61 / 4e-10 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.010G024100 [exp] 59 / 2e-09 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10012635 pacid=23161373 polypeptide=Lus10012635 locus=Lus10012635.g ID=Lus10012635.BGIv1.0 annot-version=v1.0 ATGATTTCAGCCTCCATTGTTGACGATTCCGACGTTTCATCATCATCATCATCTTCCTCGGATGTCCGTTTGGGATTCGGGGAGAGGGCTTTCGCTGCAG CCGGTTCCGCTGTTATCTCCGCCATCATTGTTAATCCTCTTGACGTCGCCAAGACAAGATTGCAAGCGCAGGCTGCTGGAGTTCCTTATGAGGGTATTTG TAGGCCAGAATGCTTGGATGCAAATAAGATACTTTCCAACAGTAGATCTCCAGCGGCGCGACAGCTTCCAGTTCCTGGCTCAAAACCACTATGTACAGGA TGTAACAGGTACAATGGCACATTGGATGTCTTCTACAAAGTTGTACGCCAGGGAAGCTATGAATTTATGCAGGAAGGATTTGGAAGATTGTGGAGAGGCA CGAATGCAAGTTTGGCTTTGGCTGTACCTACTGTGGGGATCTACTTGCCTTGTTATGACATTTTGAGGAACTTAATGGAAGAGTTCACGCATCAACATTC GCCAGCCTTAGTTCCATATGTCCCATTAATTGCTGGGTCAGTTGCACGCTCCTTAGCCTGTGTTACTTGTTATCCAGTGGAGTTGGCAAGGACCCGCATG CAGGCGTTCAATGAAGTACAAAGTGGAGTGAAGCCGCCAGGAGTATTGAGAACCCTGATTGAGGCTGTTCAGCCTGCCAGGAGCGCAAATAACTTCCAAA ATTCAGCAGTTCTAAGTTATCGTATCTTGTGGACTGGTCTTGGAGCACAAATTGCTCGAGATGTTCCCTTTTCTGCAATTTGCTGGGCAGCCCTAGAGCC GATAAGGAGGCAAGTTCTTTCTATGATGGATGATAAAAATGGTGTAACCAGTGTAGTAGGTGCAAATTTTTCTGCTGGTTTCATTGCTGGGACCTTTGCA GCTGCAGCTACTTGCCCACTAGATGTGGCGAAGACAAGAAGACAGATTGAGAAGGATCCGAGTAGAGCTACAAGTATGACTACAGTCCAAACCTTGCGAG AAATTTGGAGGGATGGGAGAGTGAAGGGGCTGTTCATGGGAGTGGGGCCTCGTGTAGCTCGTGCAGGTCCTTCTGTTGGAATAGTTGTATCCTTCTACGA AGTAGTTAAACACACGTTGCAGCAAAGATACCAAGATTGA
AA sequence Show only first row Show all	>Lus10012635 pacid=23161373 polypeptide=Lus10012635 locus=Lus10012635.g ID=Lus10012635.BGIv1.0 annot-version=v1.0 MISASIVDDSDVSSSSSSSSDVRLGFGERAFAAAGSAVISAIIVNPLDVAKTRLQAQAAGVPYEGICRPECLDANKILSNSRSPAARQLPVPGSKPLCTG CNRYNGTLDVFYKVVRQGSYEFMQEGFGRLWRGTNASLALAVPTVGIYLPCYDILRNLMEEFTHQHSPALVPYVPLIAGSVARSLACVTCYPVELARTRM QAFNEVQSGVKPPGVLRTLIEAVQPARSANNFQNSAVLSYRILWTGLGAQIARDVPFSAICWAALEPIRRQVLSMMDDKNGVTSVVGANFSAGFIAGTFA AAATCPLDVAKTRRQIEKDPSRATSMTTVQTLREIWRDGRVKGLFMGVGPRVARAGPSVGIVVSFYEVVKHTLQQRYQD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46320			Mitochondrial substrate carrie...		Lus10012635 [exp]	0	1
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	6.3	0.7537
AT4G27020			unknown protein		Lus10032644 [exp]	8.5	0.7483
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10005868 [exp]	12.7	0.7135
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	15.4	0.7450
AT2G25760			Protein kinase family protein ...		Lus10014152 [exp]	17.9	0.6987
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	18.8	0.7201
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	28.0	0.7205
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10035003 [exp]	29.4	0.6905
					Lus10019251 [exp]	33.0	0.6658
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	39.5	0.7042

Compare expression of checked genes

Lus10012635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.