Gene [FLAX] | FIBexDB

Lus10012637 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10038590 [exp]	170 / 5e-54	ND	/
Lus10032568 [exp]	158 / 5e-49	ND	/
Lus10007402 [exp]	152 / 5e-46	AT1G40087	45 / 1e-05	Plant transposase (Ptta/En/Spm family) (.1)
Lus10022515 [exp]	153 / 1e-45	ND	38 / 0.008
Lus10035242 [exp]	132 / 2e-39	ND	36 / 0.002
Lus10006015 [exp]	130 / 9e-39	ND	/
Lus10022000 [exp]	129 / 4e-38	ND	/
Lus10042943 [exp]	122 / 3e-35	ND	40 / 3e-04
Lus10036305 [exp]	81 / 7e-19	ND	/

Poplar homologues

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No hit found

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF03004 [flax] [poplar]	Transposase_24	Plant transposase (Ptta/En/Spm family)

Representative CDS sequence

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>Lus10012637 pacid=23161378 polypeptide=Lus10012637 locus=Lus10012637.g ID=Lus10012637.BGIv1.0 annot-version=v1.0

ATGGTCGACGAAAAATCATGGGAAGCGGAGCAAGAACGTCAGACCCGACTACTACCAACTCTCCAAGGAAACATGACCAACCTCGCCGCTCGTATGACGG

AGGTCTTGAATGTCTTGGCCGCCAACGGAACTCAACAAGAGGCTTATGTGTGGTGGCTCTACTGGGATAATGGTGGTGATGAGAATAGGCGTCCTTCAAA

GGAGAAGAGAGTCTCATGGAACTGTCGTATGATCTATAAGGAAGGTCGCCTCTTCGAGAAGAGCTTGAGGACTCGTAGATGGAGTGTATTGGGTCGAGAC

GGCTCAAAGACTTATTCTTCCAAAAACACCGATAGAGGGAAGCAAAAAATTTACCACACTTCTGGGTCAAAGAGTTTCTTAGCAACGTCAAAAGAGATGA

AGGAGTTGAAAAGAGAGCCTACCAGAGGAGAGTTGTATCGAGAAAGTCATAAGAGGAAAGGAGGCGGACACCCGAACAGTTCGACAAGAATAGCTGTGGA

ACATGTTCACCGGTACATCAACCACCCTGAGACACATACATCCATTAGCCCACATGATGTTATAGGTAATCTCTTTCAGGGTAAGAAGCACCCTGGCCAT

GTTTGCAGTCTTGGATTTGGGCTGGTGCCATCACAGGTCTTTAATAGCTCTACGTCACAGAGATACATCAACCACTAG

AA sequence

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>Lus10012637 pacid=23161378 polypeptide=Lus10012637 locus=Lus10012637.g ID=Lus10012637.BGIv1.0 annot-version=v1.0

MVDEKSWEAEQERQTRLLPTLQGNMTNLAARMTEVLNVLAANGTQQEAYVWWLYWDNGGDENRRPSKEKRVSWNCRMIYKEGRLFEKSLRTRRWSVLGRD

GSKTYSSKNTDRGKQKIYHTSGSKSFLATSKEMKELKREPTRGELYRESHKRKGGGHPNSSTRIAVEHVHRYINHPETHTSISPHDVIGNLFQGKKHPGH

VCSLGFGLVPSQVFNSSTSQRYINH

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012637 [exp]	0	1

Lus10012637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.