Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44440 486 / 9e-168 FAD-binding Berberine family protein (.1) AT4G20820 466 / 5e-160 FAD-binding Berberine family protein (.1) AT1G30760 454 / 2e-155 FAD-binding Berberine family protein (.1) AT5G44410 445 / 7e-152 FAD-binding Berberine family protein (.1) AT2G34790 445 / 8e-152 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44400 441 / 3e-150 FAD-binding Berberine family protein (.1) AT1G30700 438 / 4e-149 FAD-binding Berberine family protein (.1) AT5G44390 429 / 1e-145 FAD-binding Berberine family protein (.1) AT5G44360 421 / 3e-142 FAD-binding Berberine family protein (.1) AT5G44380 421 / 5e-142 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032943 [exp] 513 / 2e-178 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 505 / 2e-175 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 479 / 4e-165 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 457 / 4e-156 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 455 / 9e-156 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 456 / 2e-155 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038446 [exp] 451 / 4e-154 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 449 / 2e-153 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 446 / 8e-152 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440700 [exp] 607 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162666 [exp] 577 / 0 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 562 / 0 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 560 / 0 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 558 / 0 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 558 / 0 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 555 / 0 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 554 / 0 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 554 / 0 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162940 [exp] 550 / 0 AT5G44440 543 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10012641 pacid=23161371 polypeptide=Lus10012641 locus=Lus10012641.g ID=Lus10012641.BGIv1.0 annot-version=v1.0 ATGATGATCATCAACTACTTAGCCGCCATTCTTCTCCTATTCTCCTTCTCATGGAATGACAATATCGTCCTTGCGTCCTCATCATCCGTCCATCAAAACT TCATCCACTGCCTTTCCACCTCCTCCGCCGCTAACGTCTCGAAAATCACCTTCTACACTCCTTCCGACCCATCATACTCTTCCGTCCTCCAATTCTCAAT CCAGAACCTCCGCTTCAACACCTCCTCAGCTTCGAAACCTCTCGTGATCGTCACACCGCTCACCACTTCCCATGTCCAGTCCGCCGTACTATGCTCCAAA AAGCACGGCCTCCACCTCAGAATCCGAGGTGGTGGCCACGACTACGAGGGCTTGTCCTATGTGGCTTTATCTCCTCCAAACTTACCTTTCTTCATCCTCG ACCTCATCAACCTCTCCAGGGTAACCGTTGACGTGGCATCAAACACTGCATGGATGCAGGGTGGTGCAACTATTGGCGAACTCTACTACCAAATCGGTAC ACGTAGCAAGACCCTTGCTTTCCCCGCTGGGGTGTGCCCTACCGTGGGGGTGGGTGGACATTTCAGCGGCGGAGGGTACGGTCTTTTGCTCCGTAAATTT GGACTGGCAGCAGATCATATCGTCGACGCTCAACTCGTCGACGAAAAGGGTAGGGTCCTCAACCGTGCTTCCATGGGTGAAGATCACTTTTGGGCCATAC GTGGTGGCGGAGGTAACACTTTTGGGGTTGTCACCGCGTGGAAAGTCAACTTGGTCCCCGTGCCACAAAACGTCACAGTATTCACCGTGACTCACACTAC AGACAAAAACGCCACCATAATTCTGGACAAATGGCAACGGGTGGCAGACACTTTACCCGACGATTTGTTCATCCGAGTCATCCTAGACAGATCATCTGCC AACATCGGGCGAGCAAGATTTAACTCCTTGTACTTGGGCACACCAAACGTCCTCCTCCCTTTACTAAGTCGTCGTTTCCCAGAACTCAGTGCCACGAGGG AAGATCTCGTGGAGCTGAGCTGGATCCAGTCTGTCCTTTACTTCGCAGGATACCCCACCAATTCCTCGCTGGAGGTATTAAGAAGTAGGGTCCCCCTGGA CCCAAGGCGAAACTTCAAGGCCAAGTCAGACTACGTTTTGGACCCCATACCCGAACACGCAGTTGAAGGGGTATGGAGGCGGATCTTGCGACCCAAAATT GAGGCACCTGAAGTGATACTCAGTCCGTATGGAGGGAGGATGAGCGAGATCTCGGAGTCCAGCATTCCTTTCCCGCATAGGGCAGGGAACAAGTTTAAAA TCCAACACTTGATTTACTGGGTGAAGGAAGGGGAGAAAGCGAAGAATCGACATATTGGTTGGATAAGAGAGTTATACGGTTACCTTGCACCGCACGTATC TAAGAACCCTAGGGCAGCCTATGTAAACTACAGGGATCTGGACGTGGGGAGGAATAATGGGGAGGAAGGCGATGAAGATGAGCAGGAGGAATGGGGAGTG AAGTACTTTAAAGGAAATTACAAGAGGTTGGTTCGTGTGAAGACTGTTGTTGACCCAATGAACTTCTTTCGAAATGAGCAGAGCATCTCGCCGATATATA ACGACTAG
AA sequence Show only first row Show all	>Lus10012641 pacid=23161371 polypeptide=Lus10012641 locus=Lus10012641.g ID=Lus10012641.BGIv1.0 annot-version=v1.0 MMIINYLAAILLLFSFSWNDNIVLASSSSVHQNFIHCLSTSSAANVSKITFYTPSDPSYSSVLQFSIQNLRFNTSSASKPLVIVTPLTTSHVQSAVLCSK KHGLHLRIRGGGHDYEGLSYVALSPPNLPFFILDLINLSRVTVDVASNTAWMQGGATIGELYYQIGTRSKTLAFPAGVCPTVGVGGHFSGGGYGLLLRKF GLAADHIVDAQLVDEKGRVLNRASMGEDHFWAIRGGGGNTFGVVTAWKVNLVPVPQNVTVFTVTHTTDKNATIILDKWQRVADTLPDDLFIRVILDRSSA NIGRARFNSLYLGTPNVLLPLLSRRFPELSATREDLVELSWIQSVLYFAGYPTNSSLEVLRSRVPLDPRRNFKAKSDYVLDPIPEHAVEGVWRRILRPKI EAPEVILSPYGGRMSEISESSIPFPHRAGNKFKIQHLIYWVKEGEKAKNRHIGWIRELYGYLAPHVSKNPRAAYVNYRDLDVGRNNGEEGDEDEQEEWGV KYFKGNYKRLVRVKTVVDPMNFFRNEQSISPIYND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44440			FAD-binding Berberine family p...		Lus10012641 [exp]	0	1
AT5G57510			unknown protein		Lus10033559 [exp]	3.2	0.9681
AT2G42360			RING/U-box superfamily protein...		Lus10005105 [exp]	3.3	0.9820
					Lus10016839 [exp]	6.2	0.9721
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Lus10025427 [exp]	9.9	0.9531
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	11.7	0.9716
AT5G06740			Concanavalin A-like lectin pro...		Lus10004166 [exp]	18.8	0.9359
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005358 [exp]	20.0	0.9582
AT4G08250	GRAS		GRAS family transcription fact...		Lus10028056 [exp]	20.3	0.9649
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028898 [exp]	20.8	0.9700
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021318 [exp]	21.6	0.9555

Compare expression of checked genes

Lus10012641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.