Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01130 460 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G26430 262 / 7e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G14450 259 / 1e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 248 / 2e-79 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT3G27950 231 / 4e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54790 229 / 6e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT1G56670 216 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 201 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G05180 200 / 1e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28600 186 / 4e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032094 [exp] 266 / 4e-86 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 265 / 9e-86 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 238 / 4e-75 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029639 [exp] 233 / 2e-73 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029638 [exp] 233 / 3e-73 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029980 [exp] 229 / 1e-71 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10006224 [exp] 234 / 5e-70 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036873 [exp] 188 / 7e-57 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013938 [exp] 187 / 1e-55 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094100 [exp] 497 / 6e-177 AT4G01130 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G342600 [exp] 276 / 3e-90 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 262 / 1e-84 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 256 / 4e-82 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 254 / 2e-81 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 238 / 4e-75 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 238 / 5e-75 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 236 / 1e-74 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.001G074400 [exp] 231 / 1e-72 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G038800 [exp] 229 / 8e-72 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10012644 pacid=23161372 polypeptide=Lus10012644 locus=Lus10012644.g ID=Lus10012644.BGIv1.0 annot-version=v1.0 ATGGATAAGTTTCTGGGCCTCTGGTTGTTGGCCGCCGGGACGGCATCTTGCAGCGGAGGTGGGGGCATAATAGGCGGCTCATCTGGATGCGAGTTCGAGG CTATGTTCAACTTCGGAGACTCAAACTCCGACACGGGAGGATTTTGGGCGGCGTTTCCGTCTCAATCTGGTCCGTTTGGGATGACCTACTTCAGAAAGCC GGCTGGTCGGGCTTCTGATGGTCGCCTCATTGTTGATTTCTTAGCTGAAGCAATGGGAATTCCATTTCTTAGCCCATATCTGCAATCAATTGGATCAGAC TACAGAAAGGGTGCCAACTTCGCGACATTGGCATCTACAGTTCTATTGCCAAACACTTCCTTATTCGTCACAGGGATCAGCCCTTTCTCTCTCGCCATTC AGCTCAACCAGATGAAGCAGTTCAAGCTCCAAACCCTCCACATCCACTCGCCAGACATATTTGGTAAGTCACTTTTCACATTGTACATTGGGCAGAACGA TTTCACCTCCAATTTGGCGGACATTGGTATTGCTGGAGTAAAACAATTCCTCCCACAAGTCATTGCTCAAATTGCTTCCACCATTCAGGAATTATACGAA CTTGGAGGTCGGACATTCCTAATATTGAATCTGGCGCCTGTAGGATGCTACCCTGCATTCGCAGCCCAACTTCCTCACATCAACGCCTCGGACATAGACG AATATGGGTGCGTGATCTCGTACAACAAGGCAGCCATGGATTACAATGTAATGTTGAAGCAGAGCATGATAGAAGCCAGAGGTCTTCTCCCGAATGCTTC CCTTGTATACGTCGACACACACTCCGTCCTCTTGGATCTCTTCAAACACCCCACTTCTCATGGGCTAAGGCATGGGGCGAAAGCATGTTGCGGGTATGGA GGAGGGAAGTATAACTTCAATGGGACAGTGTATTGTGGGAACAAGAAAGTGATCAACGGTAAGAGCATGGAGGCAAGTGCTTGCCATGACCCTTGGAACT ACGTTAGCTGGGATGGCATACATACCACCGAGGCTGCCAACAAGATTCTCGCAAAGGCTATTCTCGATGGCTCTTTCTCTGATCCTCGTTTCCCCTTTTC GGCCCACTGCCGCCTCCACTCTTTTACTTAG
AA sequence Show only first row Show all	>Lus10012644 pacid=23161372 polypeptide=Lus10012644 locus=Lus10012644.g ID=Lus10012644.BGIv1.0 annot-version=v1.0 MDKFLGLWLLAAGTASCSGGGGIIGGSSGCEFEAMFNFGDSNSDTGGFWAAFPSQSGPFGMTYFRKPAGRASDGRLIVDFLAEAMGIPFLSPYLQSIGSD YRKGANFATLASTVLLPNTSLFVTGISPFSLAIQLNQMKQFKLQTLHIHSPDIFGKSLFTLYIGQNDFTSNLADIGIAGVKQFLPQVIAQIASTIQELYE LGGRTFLILNLAPVGCYPAFAAQLPHINASDIDEYGCVISYNKAAMDYNVMLKQSMIEARGLLPNASLVYVDTHSVLLDLFKHPTSHGLRHGAKACCGYG GGKYNFNGTVYCGNKKVINGKSMEASACHDPWNYVSWDGIHTTEAANKILAKAILDGSFSDPRFPFSAHCRLHSFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01130			GDSL-like Lipase/Acylhydrolase...		Lus10012644 [exp]	0	1
AT4G04480			unknown protein		Lus10015548 [exp]	2.8	0.7821
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10034441 [exp]	9.4	0.7540
					Lus10024718 [exp]	9.6	0.7613
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10032686 [exp]	9.9	0.8101
AT2G46620			P-loop containing nucleoside t...		Lus10006295 [exp]	13.2	0.7549
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10008567 [exp]	14.8	0.7785
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	14.9	0.7556
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	22.5	0.7570
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021648 [exp]	26.3	0.7435
AT1G16840			unknown protein		Lus10033369 [exp]	33.2	0.7059

Compare expression of checked genes

Lus10012644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.