Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01150 172 / 2e-55 unknown protein AT4G38100 97 / 2e-25 unknown protein AT2G46820 73 / 1e-16 PSI-P, TMP14, PTAC8, PSAP THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) AT1G52220 65 / 1e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010132 [exp] 201 / 7e-67 AT4G01150 215 / 2e-72 unknown protein Lus10003031 [exp] 142 / 9e-44 AT4G01150 153 / 3e-48 unknown protein Lus10012739 [exp] 105 / 7e-29 AT4G38100 135 / 3e-40 unknown protein Lus10002647 [exp] 88 / 5e-22 AT4G38100 130 / 5e-38 unknown protein Lus10030191 [exp] 81 / 3e-19 AT2G46820 169 / 4e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Lus10002673 [exp] 78 / 2e-18 AT2G46820 170 / 2e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166800 [exp] 173 / 5e-56 AT4G01150 188 / 6e-62 unknown protein Potri.014G093900 [exp] 172 / 2e-55 AT4G01150 181 / 3e-59 unknown protein Potri.005G147801 [exp] 99 / 1e-26 AT4G38100 107 / 1e-29 unknown protein Potri.014G106400 [exp] 81 / 2e-19 AT2G46820 154 / 2e-48 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Potri.001G184700 [exp] 72 / 2e-16 AT1G52220 160 / 3e-51 unknown protein Potri.002G180400 [exp] 72 / 5e-16 AT2G46820 137 / 1e-41 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Potri.003G052200 [exp] 44 / 7e-06 AT1G52220 88 / 2e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012645 pacid=23161347 polypeptide=Lus10012645 locus=Lus10012645.g ID=Lus10012645.BGIv1.0 annot-version=v1.0 ATGGCAGCGACGATGTACGCCGCGTCAGCTTCTTCCGCTTCCCTTCTTCTCCCCGGCGTCTCCGCCGTAAGAACCTCCTCGCGCTGCTCTTCCATGCCGT TGCTTCCACCTCGCTCCTCTTTCTCCTCCTCTCGTTCCTCCCTTGCTTCCGTCAAGCTCTCAGAATCCTCAAGGGTTTCTCTGTTCCAGACTAGAGCTTC TTCTTCAGAGGACACTTCCACCTCTGCTGATGGTAATGAAATATTTACCGATCTGAAGGAAAAGTGGGATGCACTTGAGAACAAGTCCACCGTGCTTCTC TATGGAGGTGGAGCAATAGTTGCCGTTTGGCTATCATCCACTGTTGTTGGTGCCATCAACTCTGTGCCATTGCTCCCAAAGATCATGGAGTTGGTTGGCC TTGGCTACACTGGCTGGTTTGTGTACAGATACCTTCTGTTCAAGCAAAGCAGGAAAGAACTTGCAACGGATATTGAGGCATTGAAGAAGAAAATTGCCGG GTCGGAATAG
AA sequence Show only first row Show all	>Lus10012645 pacid=23161347 polypeptide=Lus10012645 locus=Lus10012645.g ID=Lus10012645.BGIv1.0 annot-version=v1.0 MAATMYAASASSASLLLPGVSAVRTSSRCSSMPLLPPRSSFSSSRSSLASVKLSESSRVSLFQTRASSSEDTSTSADGNEIFTDLKEKWDALENKSTVLL YGGGAIVAVWLSSTVVGAINSVPLLPKIMELVGLGYTGWFVYRYLLFKQSRKELATDIEALKKKIAGSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01150			unknown protein		Lus10012645 [exp]	0	1
AT4G01150			unknown protein		Lus10010132 [exp]	1.0	0.9853
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	1.4	0.9720
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10022507 [exp]	2.0	0.9571
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10013663 [exp]	3.5	0.9656
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	3.7	0.9531
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	3.9	0.9540
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10020717 [exp]	5.5	0.9535
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	6.3	0.9477
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	7.4	0.9436
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Lus10036207 [exp]	8.7	0.9388

Compare expression of checked genes

Lus10012645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.