Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61350 87 / 9e-21 Protein kinase superfamily protein (.1) AT5G54380 84 / 1e-19 THE1 THESEUS1, protein kinase family protein (.1) AT2G23200 83 / 3e-19 Protein kinase superfamily protein (.1) AT4G39110 80 / 3e-18 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 80 / 4e-18 Malectin/receptor-like protein kinase family protein (.1) AT1G30570 78 / 2e-17 HERK2 hercules receptor kinase 2 (.1) AT2G39360 77 / 2e-17 Protein kinase superfamily protein (.1) AT5G59700 77 / 3e-17 Protein kinase superfamily protein (.1) AT3G51550 77 / 3e-17 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G38990 77 / 3e-17 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012101 [exp] 169 / 1e-49 AT2G23200 494 / 2e-162 Protein kinase superfamily protein (.1) Lus10010443 [exp] 162 / 5e-47 AT2G23200 498 / 6e-164 Protein kinase superfamily protein (.1) Lus10042844 [exp] 85 / 8e-20 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 85 / 8e-20 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10030308 [exp] 84 / 1e-19 AT3G46290 735 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 82 / 1e-18 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10003312 [exp] 82 / 1e-18 AT3G46290 741 / 0.0 hercules receptor kinase 1 (.1) Lus10038595 [exp] 81 / 1e-18 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10017478 [exp] 78 / 1e-17 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213200 [exp] 88 / 6e-21 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.005G143200 [exp] 84 / 8e-20 AT2G23200 674 / 0.0 Protein kinase superfamily protein (.1) Potri.011G128000 [exp] 84 / 1e-19 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.001G405500 [exp] 84 / 1e-19 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.005G143700 [exp] 83 / 2e-19 AT5G24010 566 / 0.0 Protein kinase superfamily protein (.1) Potri.005G144100 [exp] 82 / 4e-19 AT5G24010 550 / 0.0 Protein kinase superfamily protein (.1) Potri.001G234200 [exp] 81 / 2e-18 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.017G096400 [exp] 79 / 4e-18 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 79 / 6e-18 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 79 / 6e-18 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10012646 pacid=23161369 polypeptide=Lus10012646 locus=Lus10012646.g ID=Lus10012646.BGIv1.0 annot-version=v1.0 ATGAAGAAGAATTCGTCTGATTCTGTGAAGCAATCGAAATCGAAATATTCAACCTCCGCCAGTGCTGGGAAGAAGTTGCACAGCTGGATGGCGGTGAATA ATACCACTAGCCATGGCTCGCCTTGCCCCGAGCTGAATCTAAAGCTCAAGATGCCATTAGCTGAAATCATGGCTGCAACAGAGAAGCGAAGAATCGTGTC ACATGTAAGGTCTACCCGAATTCCAGATAGAGGTTCTAGTCCTCGCCATAGACATCTAGTCTCCTTGATCGGCTACTGCGATGACAGAGCTGAGATGATT CTCGTTTACGAGTTCATGAAGAACGAAACTCTCAGGGAATATCTCTACACCTCGGAACACGATCCTCCTCCGCCATTATTGAGCTGGAAGCAAAGGCTTG AGATCTACATAGGATAG
AA sequence Show only first row Show all	>Lus10012646 pacid=23161369 polypeptide=Lus10012646 locus=Lus10012646.g ID=Lus10012646.BGIv1.0 annot-version=v1.0 MKKNSSDSVKQSKSKYSTSASAGKKLHSWMAVNNTTSHGSPCPELNLKLKMPLAEIMAATEKRRIVSHVRSTRIPDRGSSPRHRHLVSLIGYCDDRAEMI LVYEFMKNETLREYLYTSEHDPPPPLLSWKQRLEIYIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23200			Protein kinase superfamily pro...		Lus10012646 [exp]	0	1
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	5.7	0.8946
					Lus10039892 [exp]	8.1	0.9128
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	8.8	0.8497
					Lus10032841 [exp]	10.9	0.9015
AT3G08890			Protein of unknown function, D...		Lus10012498 [exp]	16.2	0.8905
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10005548 [exp]	18.3	0.8729
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	26.2	0.8475
AT1G16260			Wall-associated kinase family ...		Lus10009751 [exp]	26.9	0.7620
AT5G24230			Lipase class 3-related protein...		Lus10018097 [exp]	27.4	0.7563
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	27.7	0.8440

Compare expression of checked genes

Lus10012646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.