Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46290 127 / 8e-35 HERK1 hercules receptor kinase 1 (.1) AT2G21480 126 / 2e-34 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 126 / 2e-34 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 125 / 5e-34 Protein kinase superfamily protein (.1) AT5G59700 122 / 5e-33 Protein kinase superfamily protein (.1) AT5G54380 120 / 2e-32 THE1 THESEUS1, protein kinase family protein (.1) AT5G24010 110 / 9e-29 Protein kinase superfamily protein (.1) AT2G39360 109 / 2e-28 Protein kinase superfamily protein (.1) AT1G30570 106 / 2e-27 HERK2 hercules receptor kinase 2 (.1) AT3G04690 106 / 3e-27 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012101 [exp] 218 / 4e-67 AT2G23200 494 / 2e-162 Protein kinase superfamily protein (.1) Lus10010443 [exp] 208 / 1e-63 AT2G23200 498 / 6e-164 Protein kinase superfamily protein (.1) Lus10028140 [exp] 134 / 6e-37 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 130 / 1e-35 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10038595 [exp] 122 / 5e-34 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028805 [exp] 124 / 1e-33 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 124 / 1e-33 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 122 / 5e-33 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10039274 [exp] 118 / 2e-31 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144200 [exp] 145 / 4e-41 AT5G24010 558 / 0.0 Protein kinase superfamily protein (.1) Potri.005G143700 [exp] 140 / 3e-39 AT5G24010 566 / 0.0 Protein kinase superfamily protein (.1) Potri.005G144100 [exp] 139 / 5e-39 AT5G24010 550 / 0.0 Protein kinase superfamily protein (.1) Potri.001G234200 [exp] 129 / 4e-35 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 127 / 2e-34 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.009G120400 [exp] 126 / 3e-34 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 126 / 3e-34 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.001G405500 [exp] 124 / 1e-33 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 124 / 2e-33 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.004G079700 [exp] 123 / 3e-33 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012647 pacid=23161350 polypeptide=Lus10012647 locus=Lus10012647.g ID=Lus10012647.BGIv1.0 annot-version=v1.0 ATGGCGTTAAAAGGATGCTTCAGTTATCTCGATCCAGAATTCTTCAGGGCGCTTCAGTTGACCGATAAATCCGACGTGTACTCGTTCGGAGTGCTCTGTG CTAGACCTCCGATTTTGAACTCATTAAAAACCGAGGAGGTCAACTTGGCGGAGTGGGGGCTGATGTGGCTGAAGAAGGGGGAGATTGAGAAGATCGTTGA TTGCGGGGGAGATAAATCCGAGTTCGTTGAGGTTGATGAGAAATGCTTGAGGGTGAATGGAGTGGGGAGGCCTTCGATGTTGGATATTTGTTGGGATTTG GAGTACGCGTTGCAGAAGAGTACGGTGAAGATAGAGCCATCGGAAGATAGCATGAGCATGACCGATGGTGGTTACTCTGGAAATGTTACGAATAATAGGG CGGTTGATAATAGCTTCACCGTTGATAAGAATATAAAGGTTGGTAGGGTTTGTGGATAA
AA sequence Show only first row Show all	>Lus10012647 pacid=23161350 polypeptide=Lus10012647 locus=Lus10012647.g ID=Lus10012647.BGIv1.0 annot-version=v1.0 MALKGCFSYLDPEFFRALQLTDKSDVYSFGVLCARPPILNSLKTEEVNLAEWGLMWLKKGEIEKIVDCGGDKSEFVEVDEKCLRVNGVGRPSMLDICWDL EYALQKSTVKIEPSEDSMSMTDGGYSGNVTNNRAVDNSFTVDKNIKVGRVCG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10012647 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10030498 [exp]	1.0	0.9954
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10006357 [exp]	2.0	0.9801
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10027345 [exp]	2.0	0.9875
AT1G45160			Protein kinase superfamily pro...		Lus10005470 [exp]	2.4	0.9828
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10023100 [exp]	10.6	0.9488
					Lus10016111 [exp]	14.1	0.9144
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	15.4	0.8798
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	16.3	0.9745
					Lus10032968 [exp]	18.2	0.9646
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	19.6	0.9608

Compare expression of checked genes

Lus10012647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.