Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46240 145 / 6e-35 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) AT1G12060 69 / 1e-12 ATBAG5 BCL-2-associated athanogene 5 (.1) AT3G29310 50 / 9e-06 calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010133 [exp] 1484 / 0 AT2G46240 67 / 5e-12 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10038064 [exp] 68 / 3e-11 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1) Lus10026469 [exp] 65 / 3e-10 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1) Lus10010486 [exp] 58 / 1e-08 AT1G12060 201 / 6e-65 BCL-2-associated athanogene 5 (.1) Lus10003798 [exp] 54 / 8e-07 AT1G12050 667 / 0.0 fumarylacetoacetase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166300 [exp] 288 / 3e-80 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Potri.003G167500 [exp] 76 / 1e-13 AT1G12060 88 / 1e-19 BCL-2-associated athanogene 5 (.1) Potri.017G091100 [exp] 71 / 3e-12 AT3G29310 141 / 2e-36 calmodulin-binding protein-related (.1) Potri.016G014900 [exp] 65 / 3e-11 AT1G12060 159 / 6e-49 BCL-2-associated athanogene 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10012648 pacid=23161361 polypeptide=Lus10012648 locus=Lus10012648.g ID=Lus10012648.BGIv1.0 annot-version=v1.0 ATGTCGTTGTCAGCCGTTAGGAAGCGCGCGAAAGATCTCGAAGAGACGAGTGTGTTGTTTTCTTCTTTGAAAAATATGACTGTTACCCGTATATATAATG AACGGGAAGCTGCCAAGACGCATTTCTCAAATTGGGAAATTGATTATCAGATAGCTTCATCAGTTGCCTGTGAAGAGAATTTAAATCCTCCGAAGTGGTT AGGGTTGGTGGATTTGGCTTTTGTGCTGATATCTGACTCTGAGTCATCTGGATTGCGGAGTTTTTTGGCTGGAAGATTTCAATCCTTTCTGTATTCTTTT GGGTTGAACGGTGAGTTGATCACTCTATACCTACTGCGTCATTTCTCCTGTACTGAAGCTGGAGACCAAGGGTTTCTGGGAGCAAGAAACGTTGTAGAAA TGTACCCTACTTGCAGACACATGGATCTACACCACCCGACCGGTGGCTATATTCCAACTTTCCTGGCTCATCCAGGAGTGGATTCGTCAAAGCAGTCGGA AGCTTGCAATCCTTGGGCATCATCTCCAAACAATTATGCCTTCCCAGTTTCCGGTTACGGCTGTAACGGATATGGTGACTATCCTGTTCACCATGGTTCT TATTTTCCTTACACATACGCAGCTCCAGGCCAGTTTTTCTGCTGTGGACATCAACCACATCCCGGAACGTTTGGTGCACCATATTACCCTCCCCCTCCCT ACTATGGGATGGAGCTTAATCATGATGGTTATAGGAAGGAAGGTGGTCTGAACCATGAGGTCAGGCATTGTTGCGGGTGTCCAAATCACACGCACAGCAA GAAAAGTCCCCAGGGGGTGAAGGTGGAGGAACTTGAGCCTGACACTAAAGGGAAGCAAGTCGATTCATACCCTATTGTGTGGATCCCAGGCGAGTTTATG AATAACAGGAACAGGGTCCAACAAGCTGATCAAAGTAGGGGTGGGATTGAAGCATCAAGAAATTCAGATGTCCATGAGCAGAATAAATTGTCTAAGCGGC AGCCAAATGGGTGGTTTCCTCTTGACATGAATCATCTTGCTTCTTTATTTGGAAATGGTGAAAAGAAGAGCCTGAGACATCACGATGGAGACAAGGAGTT CCAGGTTCCTTTTGTTTGGATGCCTTCCCGTCAAGAGAAGGAACATTCATACAAGGGAACCAATGAAAAGTCCAATGATCCTCTTCACCTTGTTGAAAAG ACGGATCCTTTATCCAAAATCTTTCAACCAGAATACTTGGGAGTCAAAAACAGCGCAGACAAGCCTCCAGAAGTGAAAGAGGATCGTAGCAGGTGCCAGG GTGGTTCTGGGGAGAAGGAGAAACATGAGAAGACCATCCCTGTAGTGGAAGTAAAACCATGTAAAGATTACGAGAACTCAGAAGACAAGGTGGGATGCAA CAGAATTGGCTCTTCAGCAAGAGCAAAAGAGGATGTGAAGAGCAAGATCACTGATATGAATAGGCAGTCGTCCTCCCCGCCCAAAACAGCAAAATTATCG CCTGTGTGTCTGAGGGTTGATCCTGCACCTAAGAAAAAGAACGGTGGCTCTCGGTCTCCTAGTCCACGTGGTTCTAAGGGGAAGTCACTGGAGATATCTC AGGACTCATGCAAGACGACTGCTGTAACTGATATAAAAGTGAAGGACCATGAGAATTCGCTTGCTGTGGGTAATACACCGACTAAGGAAACAAAAGAAGA AAGAAATGTCGAGGATAACACGGACAGATTACTTCAACCTGCTTCTGATATCAACGTCTCACAGACCCACGAGATAGCTATTATGAGTGAGACGGGAGAA TTTAGACATCAAGGAAACTTGAGAAATGAGTCCACAATGGTGACAAAAGAACCGAGTGATCTGGTCACGTTAACCAATGGAGGACAGATGGCAGGAGTGA AGAGATTATCGAAAGAAAAAGTAGCTACGCTTATCCAGTCTGTTTATCGTGGGTATTACGTAAGGAAATGGGAGCCGTTGAAGAAGCTGAAACAAATTGC TGGAGTTAGGGAGCAACTGACTGGCGTCAGGAATGGGATTCATGCTTTGGAGACGTCCACTGACTATGACGAAAAGCAGAAGGTTGCCATGGGAGAAATG ATAATGAACCTTTTGCTTAAACTGGACTCCATTCAGGGTTTGCACCCCAATGTCAGGGACATAAGAAAATCTCTGGCAAAGGAGCTCGTTACCTTGCAGG AGCATCTCGATTCTCTTGAAATTAAGAAGCGGGAGGTCTCCAAGCCTTCCGGAGGCAATCACATAGGAAACTGTGCAAGTGAAATTTTGGGGGAGAACCC ATGTATCAACCGAGAAGATGACGACTGTTACGCTTCTACACCTACTGCTGTCACTAAAGAAGCCGTAGCATCTGAAGCTGTTGGATCATCTTCAAGACAT GAGCCAGATTTAGTGTCGTCTGATGGAGACATGTCATCCAAGGTGGATGAGAGAACGGAGGATTCTGTTCTTACAAATGTTGGAGTGGAGCAATTGGAAG AGGTGGGAGCAGCTGTGCCTCAGGTTGTAGGTTCTGACCCAGAAGGTAAACCAATTCTTACCGGTGTCGCAATGCAGATTAATGGTAGCACCAATGATGA CGTGCTCAAAGGCTCAGCTCCGGAGATATTGAGCTGCGAGGCTTACGTTCCTGGTGAGGTGGAAAGGCCTTGTGAGGAGAAGTGGAACTTAGGTTGTGAA GATCGACATGAGACATATGTGGGACTGGGAGTGACCGGAGGAGAGAGAAGTGTGAAACCTGAGGAGCAATCGAATGAGAGCTTTGGCGATGAAGTTCGAG AGAAGAAGGTAAACACCGATGTTCCTGCAGGAGAAACTACAGAAGGTGTGGTGGGAACTGAAGAACTCTGTGATTTCCAGGATGTACCCCAGGAGAGATA TGCCAGTGGTTCAGTAGTATTGAAGAGTGCTGATGAACTAGCAATACAGAAGGAGCCTTCTACGATGGAGGAAGTTGCAGACAATGGAGCTGCAGAACCA ATTGTTGAGATAAATGTTGGCGCTATACAGGGAGTCCTGAATGGTTGTGAATCTTCATTACCCAAGGACCAGTCATCACAATCTGAAGCTGCAGTTGATA GTGTCACAGATGAAGGAGACACTCAACATATTCGTCCACAGCAAGAAGAGTATGAGAAGTCTAATCAAGGGGAAGAGCAAACTGGAGAAATGACTGATGG AATAACCGAAGCGGATCCAGTCTCTTCTTCTCAAGCAACAAAAGAAATATTGCTACCAGACAAGAAGGCGAGTCAGTTAGAGGAAGACATAGCGGCAACA GAGGTGGCTGAGCTGGACCTGGACCTGGACAGAGAGACCAAAGGTGATGAAAAGAGTGATAATGTACAGAAACCGAGATCACTTGGTAACGAAGATGAGA ATATAGAGGCACAGAAGAAGAGGAGGGTTCAGGAAGACAATGAGAGGAGGATGAAGGAGATGATGGAGAAGCTGGTTGAAGCTGGAACCGTGCAAATGGA GGTGATATCGAAACTTTCGAGTAGGGTTGAGGATTTGGAGAAGAGATTGTGCAACAACAAGTCTACTAGGAGGAGCAGAGGAAGATGCAGGTCAGCAAAG AAAAAGGACGCCAGCCCTGCTGCCTAA
AA sequence Show only first row Show all	>Lus10012648 pacid=23161361 polypeptide=Lus10012648 locus=Lus10012648.g ID=Lus10012648.BGIv1.0 annot-version=v1.0 MSLSAVRKRAKDLEETSVLFSSLKNMTVTRIYNEREAAKTHFSNWEIDYQIASSVACEENLNPPKWLGLVDLAFVLISDSESSGLRSFLAGRFQSFLYSF GLNGELITLYLLRHFSCTEAGDQGFLGARNVVEMYPTCRHMDLHHPTGGYIPTFLAHPGVDSSKQSEACNPWASSPNNYAFPVSGYGCNGYGDYPVHHGS YFPYTYAAPGQFFCCGHQPHPGTFGAPYYPPPPYYGMELNHDGYRKEGGLNHEVRHCCGCPNHTHSKKSPQGVKVEELEPDTKGKQVDSYPIVWIPGEFM NNRNRVQQADQSRGGIEASRNSDVHEQNKLSKRQPNGWFPLDMNHLASLFGNGEKKSLRHHDGDKEFQVPFVWMPSRQEKEHSYKGTNEKSNDPLHLVEK TDPLSKIFQPEYLGVKNSADKPPEVKEDRSRCQGGSGEKEKHEKTIPVVEVKPCKDYENSEDKVGCNRIGSSARAKEDVKSKITDMNRQSSSPPKTAKLS PVCLRVDPAPKKKNGGSRSPSPRGSKGKSLEISQDSCKTTAVTDIKVKDHENSLAVGNTPTKETKEERNVEDNTDRLLQPASDINVSQTHEIAIMSETGE FRHQGNLRNESTMVTKEPSDLVTLTNGGQMAGVKRLSKEKVATLIQSVYRGYYVRKWEPLKKLKQIAGVREQLTGVRNGIHALETSTDYDEKQKVAMGEM IMNLLLKLDSIQGLHPNVRDIRKSLAKELVTLQEHLDSLEIKKREVSKPSGGNHIGNCASEILGENPCINREDDDCYASTPTAVTKEAVASEAVGSSSRH EPDLVSSDGDMSSKVDERTEDSVLTNVGVEQLEEVGAAVPQVVGSDPEGKPILTGVAMQINGSTNDDVLKGSAPEILSCEAYVPGEVERPCEEKWNLGCE DRHETYVGLGVTGGERSVKPEEQSNESFGDEVREKKVNTDVPAGETTEGVVGTEELCDFQDVPQERYASGSVVLKSADELAIQKEPSTMEEVADNGAAEP IVEINVGAIQGVLNGCESSLPKDQSSQSEAAVDSVTDEGDTQHIRPQQEEYEKSNQGEEQTGEMTDGITEADPVSSSQATKEILLPDKKASQLEEDIAAT EVAELDLDLDRETKGDEKSDNVQKPRSLGNEDENIEAQKKRRVQEDNERRMKEMMEKLVEAGTVQMEVISKLSSRVEDLEKRLCNNKSTRRSRGRCRSAK KKDASPAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10012648 [exp]	0	1
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10010133 [exp]	1.0	0.9887
AT2G20560			DNAJ heat shock family protein...		Lus10015402 [exp]	3.2	0.9749
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027517 [exp]	3.5	0.9740
AT5G35320			unknown protein		Lus10020176 [exp]	4.8	0.9123
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10002319 [exp]	5.0	0.9705
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10035781 [exp]	5.2	0.9575
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	5.3	0.9720
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026099 [exp]	5.5	0.9679
AT1G53540			HSP20-like chaperones superfam...		Lus10009085 [exp]	7.9	0.9633
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031730 [exp]	8.0	0.9589

Compare expression of checked genes

Lus10012648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.