Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46230 333 / 3e-117 PIN domain-like family protein (.1.2) AT1G26530 261 / 3e-89 PIN domain-like family protein (.1) AT2G34570 54 / 2e-08 MEE21 maternal effect embryo arrest 21, PIN domain-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010134 [exp] 407 / 4e-145 AT2G46230 335 / 3e-117 PIN domain-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092600 [exp] 373 / 6e-133 AT2G46230 318 / 2e-112 PIN domain-like family protein (.1.2) Potri.002G166200 [exp] 365 / 9e-130 AT2G46230 332 / 9e-118 PIN domain-like family protein (.1.2) Potri.004G197200 [exp] 61 / 6e-11 AT2G34570 297 / 3e-101 maternal effect embryo arrest 21, PIN domain-like family protein (.1) Potri.009G159400 [exp] 56 / 1e-09 AT2G34570 210 / 2e-68 maternal effect embryo arrest 21, PIN domain-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF04900 [flax] [poplar] Fcf1 Fcf1
Representative CDS sequence Show only first row Show all	>Lus10012649 pacid=23161380 polypeptide=Lus10012649 locus=Lus10012649.g ID=Lus10012649.BGIv1.0 annot-version=v1.0 ATGGGAAGGGCGAAGAAGGGACCGAAGTTTGCGGTGATGAAGAAGATGATCACCTCGAAGGCGATTAAGCACTACAAGGAGGAGGTTCTGAACCCCAATA GGAAAGACCTTACCAAGGAAAATCTACCTAGAAACGTGCCGCAAGTGTCTTCGTCGCTTTATTTTACGCACAACACGGCTTTGGGACCGCCGTACAGGGT ATTGGTGGATACCAATTTTATAAATTTCTCTATTCAGAACAAACTGGACTTGGAAAAAGCAATGATGGACTGCCTCTATGCAAAATGCACTCCTTGCATC ACTGATTGTGTAATGGCAGAGCTTGAGAAGCTAGGTCAAAAGTACCGAGTCGCTTTGAGAATTGCCAAGGATCCACGTTTTGACAGAATACCTTGCATTC ATAAAGGAACCTATGCCGATGACTGCATTGTCTCCAGAGTCATTCAGCACAAGTGTTACATTGTTGCAACTTGTGATCGAGATTTGAAGCGGAGGATTCG AAAGGTACCTGGAGTTCCGATAATGTATATCACTCAACATAAATATTCAGTGGAGCGTATGCCTGAAGCCACAATTGGCGGAGGTAAAAGCTCTCTAGGC CCTATGGCTGATTTGCTCCAAGATATTGATGTTACTTTCAGTAGAGGGGGATCCAGGTCTATGTGGAGCACGAAAGGTTTTGTACTGGGGAATTTGCTAG AGTTGTATAATCATCCATTGCGATCCTCTCTTCTTTCGCAGAAATGA
AA sequence Show only first row Show all	>Lus10012649 pacid=23161380 polypeptide=Lus10012649 locus=Lus10012649.g ID=Lus10012649.BGIv1.0 annot-version=v1.0 MGRAKKGPKFAVMKKMITSKAIKHYKEEVLNPNRKDLTKENLPRNVPQVSSSLYFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCI TDCVMAELEKLGQKYRVALRIAKDPRFDRIPCIHKGTYADDCIVSRVIQHKCYIVATCDRDLKRRIRKVPGVPIMYITQHKYSVERMPEATIGGGKSSLG PMADLLQDIDVTFSRGGSRSMWSTKGFVLGNLLELYNHPLRSSLLSQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46230			PIN domain-like family protein...		Lus10012649 [exp]	0	1
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	1.0	0.9361
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10037938 [exp]	3.2	0.9157
AT1G43860			sequence-specific DNA binding ...		Lus10029749 [exp]	5.7	0.9057
AT2G44860			Ribosomal protein L24e family ...		Lus10020552 [exp]	6.9	0.8982
AT5G26800			unknown protein		Lus10011180 [exp]	8.1	0.9024
AT1G25260			Ribosomal protein L10 family p...		Lus10043280 [exp]	11.0	0.9007
AT3G54970			D-aminoacid aminotransferase-l...		Lus10040366 [exp]	12.4	0.8635
AT5G49540			Rab5-interacting family protei...		Lus10029365 [exp]	12.5	0.8660
AT3G09500			Ribosomal L29 family protein ...		Lus10003306 [exp]	13.0	0.8883
AT5G63010			Transducin/WD40 repeat-like su...		Lus10039042 [exp]	13.0	0.8740

Compare expression of checked genes

Lus10012649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.