Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01220 521 / 0 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT4G01770 466 / 2e-165 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT4G01750 460 / 5e-163 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT1G56550 457 / 1e-161 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1) AT1G70630 76 / 4e-15 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 56 / 2e-08 XEG113 xyloglucanase 113 (.1) AT4G19970 53 / 2e-07 unknown protein AT1G75110 46 / 2e-05 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28695 46 / 2e-05 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 46 / 2e-05 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002153 [exp] 613 / 0 AT4G01220 541 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10008735 [exp] 553 / 0 AT4G01220 472 / 8e-168 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10006212 [exp] 60 / 2e-09 AT1G70630 610 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036860 [exp] 57 / 5e-09 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10005034 [exp] 50 / 3e-06 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10027804 [exp] 49 / 5e-06 AT2G35610 927 / 0.0 xyloglucanase 113 (.1) Lus10034422 [exp] 49 / 5e-06 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 47 / 1e-05 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 46 / 3e-05 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092400 [exp] 534 / 0 AT4G01220 530 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.002G166000 [exp] 523 / 0 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.008G186800 [exp] 66 / 2e-11 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G037300 [exp] 55 / 3e-08 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 54 / 1e-07 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.015G029200 [exp] 49 / 2e-06 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 47 / 9e-06 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G051600 [exp] 45 / 3e-05 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.010G099400 [exp] 45 / 7e-05 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 43 / 0.0003 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10012650 pacid=23161348 polypeptide=Lus10012650 locus=Lus10012650.g ID=Lus10012650.BGIv1.0 annot-version=v1.0 ATGCCGACATCTCTGCACCAACGCTCCCACCACCCCGCATTCGCCGATCGCTTCCCGGCGTCGCTTCACTACTCCAACTTCCCCCAAAGACAAATTTCAC TCTTCAGCCGCACCGGCCTCTTAGCCTTGCTCTCCTTGATGCTGATCCTTGGTGTAATCGTGCCTTGGGCGGATATGCCAGGCGGACTCTTCTCCGTAAA CAAGGCTTCACTTCAGCAATGGCGTCACTATACTCTGTCTCAAGCTGCGTCGTTTGTTGCGAAGAATGGTACCTTGATTGTCTGTGCAGTAAGCCACCCT TACTTGCCGTTTCTTAACAACTGGTTGATCAGCATTTCCAGGCAGAAGCGCCAAGATATGGTTCTTGTCATTGCCGAGGATTACGCTACTCTTGATACGG TGAATGAGAGGTGGCCTGGACATGCTGTGCTTGTTCCCCCTGCGCTTGATTCCCAGGCCGCCCATAAGTTCGGCTCTCAGGGGTTCTTCAATTTCACTGC TAGAAGGCCTCAGCATCTGCTTCACATTCTAGAGCTTGGTTACAGTGTTATGTATAATGATGTGGACATGGTGTGGTTGGGAGATCCCTTCCCTTATTTG CAGGGAGGCCATGATGTCTACTTCACTGATGATATGACTGCGGTGAAACCTCTGGACCACTCCCATGAGTTACCACCTCCGGGGAAGAAAGGTCGCACAT ACATCTGTAGTTGCATGATTTATCTTCGGCCTACTGATGGTGCAAAACTGGTTATGAAAAAGTGGATCGAGGAACTTCAAACTCAGCCATGGTCTAGAGC AAAGAAAGCAAATGATCAACCTGCTTTTAACTGGGCGCTAAACAAAACTGCCGGACAGGTGGACATGTACCTACTTCCGCAAGCAGCATTCCCAACAGGA GGATTGTACTTCAAAAATCAAACATGGGTGGAAGAAACAAAAGGGAAGCACGTAATTATACACAACAATTACATAACAGGTTTTGGGAAGAAGATAAAGA GGTTCAAAGATAACGGCCTCTGGTTGGCGGATGATCATGCCAACGAGTCCCCACTGGGGAACGTATAG
AA sequence Show only first row Show all	>Lus10012650 pacid=23161348 polypeptide=Lus10012650 locus=Lus10012650.g ID=Lus10012650.BGIv1.0 annot-version=v1.0 MPTSLHQRSHHPAFADRFPASLHYSNFPQRQISLFSRTGLLALLSLMLILGVIVPWADMPGGLFSVNKASLQQWRHYTLSQAASFVAKNGTLIVCAVSHP YLPFLNNWLISISRQKRQDMVLVIAEDYATLDTVNERWPGHAVLVPPALDSQAAHKFGSQGFFNFTARRPQHLLHILELGYSVMYNDVDMVWLGDPFPYL QGGHDVYFTDDMTAVKPLDHSHELPPPGKKGRTYICSCMIYLRPTDGAKLVMKKWIEELQTQPWSRAKKANDQPAFNWALNKTAGQVDMYLLPQAAFPTG GLYFKNQTWVEETKGKHVIIHNNYITGFGKKIKRFKDNGLWLADDHANESPLGNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10012650 [exp]	0	1
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	2.8	0.8281
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	3.7	0.8350
AT5G37790			Protein kinase superfamily pro...		Lus10017631 [exp]	5.7	0.8274
AT3G22420		ZIK3, WNK2, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10004904 [exp]	6.3	0.8095
AT5G48460			Actin binding Calponin homolog...		Lus10025865 [exp]	9.2	0.7829
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	11.5	0.8032
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026552 [exp]	16.6	0.7637
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10022291 [exp]	19.9	0.7663
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	21.4	0.7561
AT1G22460			O-fucosyltransferase family pr...		Lus10008719 [exp]	22.4	0.7490

Compare expression of checked genes

Lus10012650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.