Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46220 256 / 4e-86 Uncharacterized conserved protein (DUF2358) (.1) AT1G79510 185 / 6e-58 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) AT1G16320 183 / 5e-57 Uncharacterized conserved protein (DUF2358) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010135 [exp] 500 / 0 AT2G46220 254 / 2e-85 Uncharacterized conserved protein (DUF2358) (.1) Lus10009597 [exp] 184 / 1e-57 AT1G79510 284 / 2e-96 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10001766 [exp] 178 / 4e-55 AT1G79510 281 / 3e-95 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092200 [exp] 301 / 3e-104 AT2G46220 273 / 5e-93 Uncharacterized conserved protein (DUF2358) (.1) Potri.010G173000 [exp] 190 / 9e-60 AT1G79510 357 / 4e-125 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.008G083400 [exp] 93 / 6e-24 AT1G79510 192 / 1e-62 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.013G036500 [exp] 41 / 0.0003 AT3G04890 242 / 2e-81 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10012651 pacid=23161374 polypeptide=Lus10012651 locus=Lus10012651.g ID=Lus10012651.BGIv1.0 annot-version=v1.0 ATGGCGCTGATCATTCATTCCCCCGAAATCTCCTCCTCCTCCAAGATCCTCTTCAACCCTAACCCGACTTCAAGGCATCTCAAGACCCCCTCCTCCAGAT TGGTCGCCAGGGTCAAGGTTGGGGTTCGAGACTCCGAGGTTAGGGTTCCAGGGCTGACCCGCGATGATTCCATGATGTTATATGGTCAGTTCTCTGCCCC TGTGGTGAATCCAGGTACTAAGAGGAGCAACGAGGAAGATGAGGAGAAGCAGAATTACTATGTCAATATGGGACACGCCATCAGGACTCTCAGAGAGGAG CTCCCTCTCCTCTTTTACAACCACCTCACTTTCGATATCTACAGGGACGATATCGTATTCAGAGATCGTATCAACACCTTGATAGGAATCCAGAACTACA AGACACTGTTTTGGGCACTGCGTATCCTCGGCAGGATGTTCTTCAAGGGATTGTCTGTTGACATCATTAGTGTTTGGCAACCTGTTGAGGATGTAATACT GATCAGGTGGGCACTACATGGGGTCCCTCGAGTCCCATGGGAGGGTCTGGCTCGTCTTGATGGAATCTCAGAGTACAAACTGGACAGCAAAGGCAAGATT TATCAGCACAAAGTAGACAACATGGCCTTTAACTCACCTCCTCCAAAGTTCAGAGTGATGGGTATGGAGGAACTACTCCAGGCTATTGGTTGTCCCTCAA CACCAAGACCTACTTATTTTGAGGCATCCTCTGTACCGCCAGAGAAGAACTAG
AA sequence Show only first row Show all	>Lus10012651 pacid=23161374 polypeptide=Lus10012651 locus=Lus10012651.g ID=Lus10012651.BGIv1.0 annot-version=v1.0 MALIIHSPEISSSSKILFNPNPTSRHLKTPSSRLVARVKVGVRDSEVRVPGLTRDDSMMLYGQFSAPVVNPGTKRSNEEDEEKQNYYVNMGHAIRTLREE LPLLFYNHLTFDIYRDDIVFRDRINTLIGIQNYKTLFWALRILGRMFFKGLSVDIISVWQPVEDVILIRWALHGVPRVPWEGLARLDGISEYKLDSKGKI YQHKVDNMAFNSPPPKFRVMGMEELLQAIGCPSTPRPTYFEASSVPPEKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	0	1
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	1.0	0.9771
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	1.7	0.8486
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10023517 [exp]	2.8	0.8462
AT4G01400			unknown protein		Lus10012607 [exp]	3.5	0.8268
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021438 [exp]	7.4	0.8192
AT5G15802			unknown protein		Lus10008785 [exp]	8.2	0.8604
AT4G15545			unknown protein		Lus10034001 [exp]	8.5	0.8229
AT1G80940			unknown protein		Lus10024095 [exp]	14.7	0.7930
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10023530 [exp]	14.7	0.8185
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10039079 [exp]	15.0	0.8218

Compare expression of checked genes

Lus10012651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.