Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37770 441 / 2e-155 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G37790 432 / 8e-152 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT3G53880 406 / 1e-141 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 374 / 2e-129 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT5G01670 247 / 4e-79 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT5G62420 219 / 2e-68 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G21250 216 / 3e-67 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21260 213 / 3e-66 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59960 196 / 4e-59 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59950 182 / 4e-54 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024353 [exp] 558 / 0 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10021491 [exp] 427 / 3e-150 AT2G37770 464 / 2e-166 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010885 [exp] 428 / 4e-150 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024354 [exp] 417 / 2e-142 AT2G37770 467 / 2e-163 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010884 [exp] 400 / 3e-139 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024350 [exp] 318 / 5e-104 AT3G53900 374 / 9e-128 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Lus10027216 [exp] 236 / 8e-75 AT5G62420 429 / 2e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031162 [exp] 234 / 6e-74 AT5G62420 431 / 1e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10030946 [exp] 231 / 1e-72 AT1G59960 317 / 1e-107 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090600 [exp] 426 / 3e-149 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 419 / 2e-146 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102032 [exp] 413 / 3e-144 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G070600 [exp] 380 / 3e-131 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102300 [exp] 346 / 9e-118 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.001G125400 [exp] 233 / 1e-73 AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G144600 [exp] 229 / 9e-72 AT2G37770 251 / 1e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.010G097800 [exp] 227 / 8e-71 AT2G37770 250 / 3e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.005G097000 [exp] 225 / 1e-70 AT1G59960 405 / 2e-142 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G193100 [exp] 218 / 1e-67 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family PF02330 [flax] [poplar] MAM33 Mitochondrial glycoprotein
Representative CDS sequence Show only first row Show all	>Lus10012652 pacid=23156096 polypeptide=Lus10012652 locus=Lus10012652.g ID=Lus10012652.BGIv1.0 annot-version=v1.0 ATGGGAAAAGAACTTCCATCCTTTAAGTTGAACACCGGAGCTAGCATCCCGGCGATTGGCCTGGGGACGTGGCAGGCCGCACCTGGTCTTATTGGATACA GGCATATTGACTGTGCTCAAGCATACGGCAATGAAAATGAGGTGGGAGCTGTTCTGAAGAAGCTCTTTGACGAGGGTGTGGTCAAGCGTGAGGATCTGTT CATCACCTCCAAGCTCTGGAATGCTAATCATTCACCGGAAGATGTTCCCGTGAATCTGGAAGGAACTCTCCGTAACTTGCAGATTGACTATGTAGATTTA TACCTGATTCATTGGCCGGTTAGATTCAGGAAAGGGGCAGTTGGGTCCAAGCCTGACAACGTTGTGGAATCTGATATTCCGGCCACTTGGCGAGCCATGG AGGCTACTTTTGATGCAGGGAAAGCTCGAGCTATTGGAGTGAGCAATTTCTCCTCCAAGAAACTTGGAGATTTGATCGAGATTGCTCGGGTTCCTCCCGC TGTGCTCCAGGTCGAATGCCATCCTCACTGGCAACAGCCTACGCTACATGACTTCTGCAAATCCAAAGGAGTTCATCTAACTGGATATTCACCATTGGGG TCACCAGGCACCACATGGTTTACCATGGATGTTCTGAAGAACCCAATCTTGAACATGGTTGCTGAGAAAGTAGGGAAAACTCCAGCACAAGTGGCCCTCC GCTGGGGCCTGCAAATGGGGCATAGTGTTCTCCCCAAGAGCACTAAGGAGGAAAGGATCAAGGAGAATTTGGAAGTCTTTGATTGGTCAATCCCTGATGA CTTGTTCTTTAAGTTCTCTGAAATTGAGCAGATTGACGGCATCCCGGATGATTTCCCTTTCGAAATCCAAGACAACTCCGAAAGCTTGGAACTCGTTCTA CAGAGAACATCCGGTGATGAAGTTGTAGAAATCGTTGTCGATTTGCTTACCATCAAGGACTTCGGCAAGGATAATGTCCTTTGCAGTATTCCTCTGGTGG CAACCGTGACCAAACCAAGCGGGCAGCAGTTGGAGTTTTGCTTCATGGCTTTCCCTCACGAGTTCGAAATCGAGAGTGTGCCAATTAGAGACTCTGATGA TAATGAAGAAGAACTTGCTTCTTATTTTCTGGCAAGTGACTTGGATTCTAAGGCGCAGAAGGCATTTTACATGTATTTGGAATCTAGAGGGATCAAGGCT GGGAGAATGATAAGATTCTTGTCATTAAGTGACGAACAAGGATAA
AA sequence Show only first row Show all	>Lus10012652 pacid=23156096 polypeptide=Lus10012652 locus=Lus10012652.g ID=Lus10012652.BGIv1.0 annot-version=v1.0 MGKELPSFKLNTGASIPAIGLGTWQAAPGLIGYRHIDCAQAYGNENEVGAVLKKLFDEGVVKREDLFITSKLWNANHSPEDVPVNLEGTLRNLQIDYVDL YLIHWPVRFRKGAVGSKPDNVVESDIPATWRAMEATFDAGKARAIGVSNFSSKKLGDLIEIARVPPAVLQVECHPHWQQPTLHDFCKSKGVHLTGYSPLG SPGTTWFTMDVLKNPILNMVAEKVGKTPAQVALRWGLQMGHSVLPKSTKEERIKENLEVFDWSIPDDLFFKFSEIEQIDGIPDDFPFEIQDNSESLELVL QRTSGDEVVEIVVDLLTIKDFGKDNVLCSIPLVATVTKPSGQQLEFCFMAFPHEFEIESVPIRDSDDNEEELASYFLASDLDSKAQKAFYMYLESRGIKA GRMIRFLSLSDEQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10012652 [exp]	0	1
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	3.2	0.9398
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	4.6	0.9035
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	5.8	0.9222
AT4G24810			Protein kinase superfamily pro...		Lus10043122 [exp]	5.9	0.9100
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	6.0	0.9096
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	7.3	0.9162
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	8.7	0.8893
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	10.8	0.9154
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10041186 [exp]	11.4	0.8656
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	11.5	0.8844

Compare expression of checked genes

Lus10012652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.