Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02050 201 / 2e-65 Mitochondrial glycoprotein family protein (.1) AT3G55605 163 / 1e-50 Mitochondrial glycoprotein family protein (.1) AT2G39795 161 / 4e-50 Mitochondrial glycoprotein family protein (.1) AT5G05990 150 / 1e-45 Mitochondrial glycoprotein family protein (.1) AT2G39790 100 / 4e-26 Mitochondrial glycoprotein family protein (.1) AT1G15870 97 / 4e-25 Mitochondrial glycoprotein family protein (.1) AT1G80720 93 / 6e-24 Mitochondrial glycoprotein family protein (.1) AT4G31930 85 / 1e-20 Mitochondrial glycoprotein family protein (.1) AT4G32605 60 / 2e-11 Mitochondrial glycoprotein family protein (.1) AT2G46190 49 / 3e-07 Mitochondrial glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024351 [exp] 293 / 4e-102 AT5G02050 231 / 6e-76 Mitochondrial glycoprotein family protein (.1) Lus10001017 [exp] 169 / 5e-54 AT3G55605 199 / 2e-64 Mitochondrial glycoprotein family protein (.1) Lus10001015 [exp] 171 / 6e-54 AT3G55605 232 / 1e-76 Mitochondrial glycoprotein family protein (.1) Lus10030157 [exp] 169 / 4e-53 AT3G55605 236 / 6e-78 Mitochondrial glycoprotein family protein (.1) Lus10026060 [exp] 110 / 4e-30 AT1G15870 263 / 4e-89 Mitochondrial glycoprotein family protein (.1) Lus10017126 [exp] 88 / 9e-22 AT4G31930 240 / 3e-80 Mitochondrial glycoprotein family protein (.1) Lus10018327 [exp] 86 / 6e-21 AT4G31930 243 / 2e-81 Mitochondrial glycoprotein family protein (.1) Lus10012652 [exp] 84 / 3e-19 AT2G37770 441 / 4e-155 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024352 [exp] 74 / 1e-16 AT5G02050 78 / 3e-17 Mitochondrial glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090700 [exp] 211 / 9e-70 AT5G02050 228 / 9e-75 Mitochondrial glycoprotein family protein (.1) Potri.016G102200 [exp] 186 / 5e-60 AT5G02050 216 / 4e-70 Mitochondrial glycoprotein family protein (.1) Potri.010G198600 [exp] 174 / 6e-55 AT2G39795 222 / 1e-72 Mitochondrial glycoprotein family protein (.1) Potri.010G198500 [exp] 165 / 1e-51 AT3G55605 210 / 1e-67 Mitochondrial glycoprotein family protein (.1) Potri.001G047600 [exp] 97 / 5e-25 AT1G15870 256 / 2e-86 Mitochondrial glycoprotein family protein (.1) Potri.018G021600 [exp] 92 / 2e-23 AT4G31930 259 / 1e-87 Mitochondrial glycoprotein family protein (.1) Potri.004G049600 [exp] 80 / 3e-18 AT5G02050 96 / 4e-23 Mitochondrial glycoprotein family protein (.1) Potri.010G244500 [exp] 68 / 4e-14 AT4G32605 242 / 3e-81 Mitochondrial glycoprotein family protein (.1) Potri.008G015600 [exp] 60 / 5e-11 AT4G32605 262 / 2e-88 Mitochondrial glycoprotein family protein (.1) Potri.006G046350 [exp] 51 / 3e-08 AT2G41600 210 / 2e-69 Mitochondrial glycoprotein family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02330 [flax] [poplar] MAM33 Mitochondrial glycoprotein
Representative CDS sequence Show only first row Show all	>Lus10012653 pacid=23156089 polypeptide=Lus10012653 locus=Lus10012653.g ID=Lus10012653.BGIv1.0 annot-version=v1.0 ATGAAACAGGATTTCGACGTTCCGGACGGGTTCCCTTTCGAAATCGAAGATACCGAAGGGGATAGGACGATATTCCTCACAAGGAAATTTGAGGACCAAA CGATCAAAGTTGAAGTTGATATGTTTAACGTTGAGGGAGATACTGAATATGACAATAAAGGTGAGGATGAAGAAGCCAATGACTCATCAAACATCCCTAT GGTGGTCACAATCTCCAAAGGAAATGGCCAGGTGCTAGAGTTTGGCATCACTGCTTTCCCTGACGAGATCACCATTGATAGCCTGTCTATTAAAAACCAA TCGAGCTCTGAAGAACACCTGCCCTATGAAGGTCCTGATTTCAGTGACTTGGATGAGAACTTGCAGAAGGCTTTCCACAAGTACTTGGAGATCAGAGGGA TCAAGCCGAGTACCACCAATTTCTTGCTGGAGTACAAGACCAACAAGGATGACAGAGAGTATCTGAATTGGTTGAACAACCTCAAGAAGTTTGTCGAGAA GTAG
AA sequence Show only first row Show all	>Lus10012653 pacid=23156089 polypeptide=Lus10012653 locus=Lus10012653.g ID=Lus10012653.BGIv1.0 annot-version=v1.0 MKQDFDVPDGFPFEIEDTEGDRTIFLTRKFEDQTIKVEVDMFNVEGDTEYDNKGEDEEANDSSNIPMVVTISKGNGQVLEFGITAFPDEITIDSLSIKNQ SSSEEHLPYEGPDFSDLDENLQKAFHKYLEIRGIKPSTTNFLLEYKTNKDDREYLNWLNNLKKFVEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02050			Mitochondrial glycoprotein fam...		Lus10012653 [exp]	0	1
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	12.0	0.7591
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10009702 [exp]	17.0	0.7243
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	19.1	0.7040
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10040756 [exp]	19.6	0.6998
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Lus10041717 [exp]	28.9	0.7111
AT2G37560		ATORC2	origin recognition complex sec...		Lus10025330 [exp]	31.8	0.7083
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10000181 [exp]	34.5	0.6638
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10024376 [exp]	34.5	0.6942
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	39.9	0.6588
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009681 [exp]	45.1	0.5828

Compare expression of checked genes

Lus10012653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.