Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53900 367 / 9e-126 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT2G37790 87 / 7e-19 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37770 82 / 3e-17 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT3G53880 80 / 2e-16 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G40870 74 / 4e-14 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27440 72 / 2e-13 UKL5 uridine kinase-like 5 (.1) AT4G26510 71 / 4e-13 UKL4 uridine kinase-like 4 (.1.2) AT2G37760 70 / 4e-13 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT3G27190 71 / 5e-13 UKL2 uridine kinase-like 2 (.1) AT1G55810 67 / 8e-12 UKL3 uridine kinase-like 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024350 [exp] 464 / 2e-160 AT3G53900 374 / 9e-128 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Lus10024354 [exp] 84 / 5e-17 AT2G37770 467 / 2e-163 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024353 [exp] 81 / 2e-16 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010885 [exp] 80 / 3e-16 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010884 [exp] 79 / 8e-16 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10012652 [exp] 79 / 2e-15 AT2G37770 441 / 4e-155 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10032051 [exp] 74 / 8e-14 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 72 / 2e-13 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021491 [exp] 67 / 3e-12 AT2G37770 464 / 2e-166 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091000 [exp] 424 / 6e-148 AT3G53900 379 / 7e-133 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Potri.016G102300 [exp] 114 / 3e-28 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102032 [exp] 87 / 6e-19 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 87 / 9e-19 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.006G090600 [exp] 85 / 6e-18 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G069600 [exp] 76 / 1e-14 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 74 / 7e-14 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G467800 [exp] 72 / 3e-13 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 71 / 5e-13 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.017G070600 [exp] 64 / 4e-11 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10012654 pacid=23156081 polypeptide=Lus10012654 locus=Lus10012654.g ID=Lus10012654.BGIv1.0 annot-version=v1.0 ATGCAGGCTGGTTACAGGCACATTGACTGTGCCAGTGTCTATGATAATGAGAAAGAGGTAGTGAAAGCACTGAATGAGTTATTTGCCTCTGGAGTGGTTC GGCGCAGTGCAGTGATCAGGCTCCTGAAGATGTCCCAAAGGCACTCGCCAAGAGTTTACAAGATCTACAGCTGGACTACAGATTATGTTGATTATGTTTG CAAACAGATCCATTGGCCGTTTCGGACGAAACCAGGCTCGAGGGGGTTTGATCCTGAAGTCATGGCTCCCTTAACCCTCCCGGAGACATGGGCTGCCATG GAACTACCTTTCCCCTCCGGATGTATGGCGTTCCGTGCAAATTCCCCTTCATTTACGCCGCGTTTTGCTCCGCAATGTCTCCTTCAAAACCCTAATTCTT CTTCTTCTTCTTCTTCTTCTTCTTCCCTTTACCCCCGATTCTCATCCTCCTTCCCTCCTCCTCCTTCCACCTTTTCTCTCCGCAAGGTACAAACCCAATC ATTCCCTCGCTTTTACCCCAGTCAGAGCATTTTCAAATGCGAGTCAAGATTCCTCATTGGGTCTTACCATCCGTTTCCCCCTGTTTTTCAGATGTCCTGT AACAGTCCTTCGCGTCGCAGCTTTGTTACCGTCAAGTCTCACATAGCTACTGAGGAGAAGTCCGTGTCAAAGGGCCGGATGCTTGTTTTTGTGCCTCCAC ATCCGTTGATCAAGCACTGGGTTTCTGTTTTGAGGAATGAGCAAACTCCTTGCCCCGTTTTCCGGAATGCTATGGCTGAGCTAGGAAGGCTGCTTTTATA TGAAGCTTCCCGAGATTGGCTGCCTACTGTTTCCGGGGAGATTCAGTCACCTATGGGTGTTGCCTCAGTTGAATTTATTGATCCACGAGAACCAGTAGCG GTTATTCCGATTTTGAGAGCTGGTCTCGCTCTGGCGGACCATGCCTCTTCTATCTTGCCAGCAACTAAAACGTACCATCTAGGGCTAAGCAGAGATGAAG AGACTCTTCAACCGACCATATATCTGAACAAGTTGCCTGAGAAGTTTCCGAAAGGATCTCGTGTGTTTGTGGTAGACCCTATGCTGGCAACAGGTAATGG TGCCATTCCGGATTTGCGTGGAGTCTTGTGCTGGCAACTTAGTATTTTGCTCGTGTCGATTTCAGGTGGAACTATAGTAGCAGCAATCGAGCATGTCAAG AAACGGGGAGTTGAAAACAACCAAATCAAAGTGATTTCAGCTGTGGCTGCACCTCCGGCTCTACAAAAGCTCAGCGAAAATTTCCCTGGGCTCCATGTAT ACACTGGAATCATTGATCCCAGCGTCAACGAGAAAGGTTTTATTATCCCTGGACTTGGAGATGCAGGAGATCGAAGTTTTGGTACAGAGTAA
AA sequence Show only first row Show all	>Lus10012654 pacid=23156081 polypeptide=Lus10012654 locus=Lus10012654.g ID=Lus10012654.BGIv1.0 annot-version=v1.0 MQAGYRHIDCASVYDNEKEVVKALNELFASGVVRRSAVIRLLKMSQRHSPRVYKIYSWTTDYVDYVCKQIHWPFRTKPGSRGFDPEVMAPLTLPETWAAM ELPFPSGCMAFRANSPSFTPRFAPQCLLQNPNSSSSSSSSSSLYPRFSSSFPPPPSTFSLRKVQTQSFPRFYPSQSIFKCESRFLIGSYHPFPPVFQMSC NSPSRRSFVTVKSHIATEEKSVSKGRMLVFVPPHPLIKHWVSVLRNEQTPCPVFRNAMAELGRLLLYEASRDWLPTVSGEIQSPMGVASVEFIDPREPVA VIPILRAGLALADHASSILPATKTYHLGLSRDEETLQPTIYLNKLPEKFPKGSRVFVVDPMLATGNGAIPDLRGVLCWQLSILLVSISGGTIVAAIEHVK KRGVENNQIKVISAVAAPPALQKLSENFPGLHVYTGIIDPSVNEKGFIIPGLGDAGDRSFGTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10012654 [exp]	0	1
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10027678 [exp]	1.0	0.8491
AT5G66580			unknown protein		Lus10000739 [exp]	4.2	0.7984
AT5G60370			unknown protein		Lus10038466 [exp]	6.3	0.7849
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031301 [exp]	6.8	0.8133
					Lus10042510 [exp]	7.5	0.7818
AT4G16650			O-fucosyltransferase family pr...		Lus10028957 [exp]	11.5	0.7337
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10012271 [exp]	12.8	0.7292
					Lus10035252 [exp]	16.4	0.6957
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	17.2	0.7544
AT5G55150			Protein of unknown function (D...		Lus10007081 [exp]	21.0	0.7375

Compare expression of checked genes

Lus10012654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.