Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 50 / 4e-07 Protein kinase superfamily protein (.1) AT4G02010 48 / 2e-06 Protein kinase superfamily protein (.1) AT4G05200 47 / 4e-06 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT3G55450 43 / 8e-05 PBL1 PBS1-like 1 (.1.2) AT1G70460 42 / 0.0001 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 42 / 0.0002 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G58690 41 / 0.0002 Protein kinase superfamily protein (.1) AT3G26940 41 / 0.0003 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT4G21230 41 / 0.0003 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT1G51860 41 / 0.0004 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024348 [exp] 157 / 3e-44 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 151 / 4e-42 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 149 / 2e-41 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10024512 [exp] 48 / 2e-06 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10033782 [exp] 46 / 1e-05 AT5G10530 351 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) Lus10037526 [exp] 45 / 2e-05 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10034897 [exp] 44 / 4e-05 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 44 / 4e-05 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10008015 [exp] 44 / 4e-05 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102700 [exp] 91 / 3e-21 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 91 / 3e-21 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 91 / 4e-21 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 90 / 1e-20 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.016G102500 [exp] 89 / 3e-20 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.013G096400 [exp] 49 / 1e-06 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G096300 [exp] 47 / 2e-06 AT1G34300 262 / 2e-80 lectin protein kinase family protein (.1) Potri.013G095800 [exp] 47 / 3e-06 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.014G119100 [exp] 47 / 4e-06 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.004G025900 [exp] 46 / 7e-06 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012655 pacid=23156092 polypeptide=Lus10012655 locus=Lus10012655.g ID=Lus10012655.BGIv1.0 annot-version=v1.0 ATGGAGACTTGCAGGGATCTTTGCTTGGACGATTGCCAGTGTGATGCCTATAGCTATAGACTGACTAGGGAAGCGGTTTGTTGTACTAAGAGTATCATGT TCAATGGCTACCAGTCTACAGCATTTCTGGGGGACATATACTTGAAGCTACCGCTGAGTGTTGATGTTGTTGCGAAGGAAGAAGAAGCGCTGAGTCTCGA TGGGAGCGACATTGTTTGCGATGACGGAGGGTCGAGGATTGAGATTGGTTCTCTGTCTATGTACGAGATAGAGACCAAGAGACTGAGCTATGGAGTTGTG ATTCTTGAACTTGTGAAAGGAATTAGGCTCTCCGATATGGTTGAGGAAGAGGAAGAAGGTGAGCTTGCTAGGTTTTTCAGGATATCCGAAAGGAAAATCG CACCAGGAGGAAGTGAGTCGTGGGTTGATGATCCGGAGATAGTGGAACTGAAGTTGAAAGGGAAGTTTAGTCATAAACAAGTGGTGAAAATGGTCGAAAT CAGGCTGGCTTGTGCCGATGAAGACCGAAACAAGAGGCCTACTATGGACATTGTAGTCCAATCTCTACTAGATTTTCAGGATTACAGGGCAAACACAACT GTTCCTGAATCGTCATCATCTCCCTAG
AA sequence Show only first row Show all	>Lus10012655 pacid=23156092 polypeptide=Lus10012655 locus=Lus10012655.g ID=Lus10012655.BGIv1.0 annot-version=v1.0 METCRDLCLDDCQCDAYSYRLTREAVCCTKSIMFNGYQSTAFLGDIYLKLPLSVDVVAKEEEALSLDGSDIVCDDGGSRIEIGSLSMYEIETKRLSYGVV ILELVKGIRLSDMVEEEEEGELARFFRISERKIAPGGSESWVDDPEIVELKLKGKFSHKQVVKMVEIRLACADEDRNKRPTMDIVVQSLLDFQDYRANTT VPESSSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	0	1
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	3.2	0.8895
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10036710 [exp]	4.7	0.8570
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	6.0	0.8761
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	6.0	0.8692
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	6.2	0.8766
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	9.8	0.8708
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10020597 [exp]	9.9	0.8668
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	11.2	0.8631
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10019227 [exp]	11.2	0.8338
AT3G20680			Domain of unknown function (DU...		Lus10006345 [exp]	12.0	0.8560

Compare expression of checked genes

Lus10012655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.