Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37860 414 / 1e-144 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT5G22790 392 / 4e-136 RER1 reticulata-related 1 (.1) AT3G08640 93 / 2e-21 Protein of unknown function (DUF3411) (.1) AT3G08630 89 / 6e-20 Protein of unknown function (DUF3411) (.1) AT5G12470 82 / 2e-17 Protein of unknown function (DUF3411) (.1) AT3G56140 75 / 1e-14 Protein of unknown function (DUF399 and DUF3411) (.1) AT2G40400 70 / 4e-13 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT5G24690 64 / 4e-11 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024346 [exp] 468 / 2e-168 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10043364 [exp] 348 / 7e-119 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10019521 [exp] 180 / 5e-54 AT2G37860 280 / 1e-91 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10009956 [exp] 87 / 4e-19 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10003242 [exp] 86 / 1e-18 AT3G08640 372 / 6e-127 Protein of unknown function (DUF3411) (.1) Lus10003180 [exp] 85 / 3e-18 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 83 / 1e-17 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 82 / 1e-17 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10040960 [exp] 82 / 5e-17 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103100 [exp] 447 / 2e-157 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.009G150400 [exp] 414 / 7e-145 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.016G140700 [exp] 91 / 2e-20 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.006G111300 [exp] 88 / 1e-19 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 87 / 3e-19 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 87 / 3e-19 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 85 / 2e-18 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.008G074300 [exp] 71 / 1e-13 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.001G210500 [exp] 65 / 2e-11 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.003G019600 [exp] 64 / 3e-11 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10012657 pacid=23156086 polypeptide=Lus10012657 locus=Lus10012657.g ID=Lus10012657.BGIv1.0 annot-version=v1.0 ATGCTGGCGGCTGCCAAGAGTGAAGGGATTCGCAAATTGCTTCTATTCAGATACCTGGACTTGCAGGGTGCTGGAGGAGTTTTGGGATTCGTAATGAAGT CTTGCGCTATCCTTCGCAATAGAATGCTGGCAGATCCCTCCTTCCTTTTCAAAATTGGAACTGAGATAGTGATTGATACTTGCTGTGCTACATTTGCTGA AGTGCAAAAGAGAGGCAAAGACTTTTGGGCGGAGTTTGAACTGTATCTTGCAGACATGATAGTTGGCGTGGTGGTTAACATAGCTTTGGTTGGTATGTTA GCACCATATGCACGGTTCGGGAAGCTATCGGCTTCCAAAGGAATCCTCGGTCAACTCCAATATGCTTATGCAGCTCTTCCCAGTAGTGTTTTTGAAGCTG AAAGGCCAGGGTGCAGATTCTCCAACAAGCAGAGACTTGCTACATATTTCTTCAAGGCAAGCTTGGGTTTCTTGTATGGAGGAGTTGGCTTTTCGTGCGG TATCATAGGCCAAGGCATAGCAAATCTCATCATGACTGCAAAGAGGAGTATTAAGAAATCGGAAGAAGACATCCCAGTGCCACCTTTGGTGAAGAGTGCA GCTCTCTGGGGTATGGCCACTCATCATTTTACTCCCTCTATCGGAAAGTTCAAAGCTTTAACTTTCATTCATGCCAAACTCAAAAACCAATCTCATCAAC CGGTTCTGTCTGTTTCCCTAAACCTTTTTGCAGGCGTTTTCATGGCGGTCTCATCGAACACCCGCTACCAAGTTGTCAACGGATTAGAATGCCTAGTAGA AGCTTCGCCCTTGGCGAAAAGGGTTCCCCCAATCACGCTGGCATTTACTGTTGGTGTCCGATTCGCAAATAACATCTACGGAGGAATGCAGTTCGTTGAC TGGGCTAGACGGAGTGGTGTCCAGTAG
AA sequence Show only first row Show all	>Lus10012657 pacid=23156086 polypeptide=Lus10012657 locus=Lus10012657.g ID=Lus10012657.BGIv1.0 annot-version=v1.0 MLAAAKSEGIRKLLLFRYLDLQGAGGVLGFVMKSCAILRNRMLADPSFLFKIGTEIVIDTCCATFAEVQKRGKDFWAEFELYLADMIVGVVVNIALVGML APYARFGKLSASKGILGQLQYAYAALPSSVFEAERPGCRFSNKQRLATYFFKASLGFLYGGVGFSCGIIGQGIANLIMTAKRSIKKSEEDIPVPPLVKSA ALWGMATHHFTPSIGKFKALTFIHAKLKNQSHQPVLSVSLNLFAGVFMAVSSNTRYQVVNGLECLVEASPLAKRVPPITLAFTVGVRFANNIYGGMQFVD WARRSGVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	0	1
AT5G44710			unknown protein		Lus10038399 [exp]	1.4	0.8965
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	2.0	0.8979
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10027728 [exp]	3.5	0.8736
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	5.0	0.8858
AT3G58030			RING/U-box superfamily protein...		Lus10021063 [exp]	7.4	0.8746
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10029631 [exp]	7.5	0.8514
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	8.7	0.8942
AT2G03190		ASK16	SKP1-like 16 (.1)		Lus10031747 [exp]	8.8	0.8948
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	8.8	0.8800
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10003980 [exp]	9.5	0.8692

Compare expression of checked genes

Lus10012657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.