Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53940 328 / 4e-112 Mitochondrial substrate carrier family protein (.1) AT2G37890 288 / 8e-97 Mitochondrial substrate carrier family protein (.1) AT3G55640 280 / 1e-93 Mitochondrial substrate carrier family protein (.1) AT5G51050 125 / 1e-32 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G01100 114 / 1e-29 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G26180 112 / 6e-29 Mitochondrial substrate carrier family protein (.1) AT5G61810 103 / 2e-25 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G01500 100 / 5e-24 TAAC thylakoid ATP/ADP carrier (.1) AT3G51870 100 / 6e-24 Mitochondrial substrate carrier family protein (.1) AT4G32400 98 / 3e-23 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021497 [exp] 385 / 1e-134 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 375 / 1e-131 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 369 / 2e-128 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 288 / 9e-97 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10040257 [exp] 224 / 2e-72 AT3G55640 358 / 2e-124 Mitochondrial substrate carrier family protein (.1) Lus10024343 [exp] 139 / 1e-36 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10033947 [exp] 121 / 7e-32 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 120 / 1e-31 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 120 / 2e-31 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103300 [exp] 348 / 2e-120 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 347 / 7e-120 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 302 / 1e-102 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 300 / 8e-102 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 124 / 6e-33 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.015G108900 [exp] 125 / 1e-32 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 125 / 1e-32 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 121 / 5e-32 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 120 / 1e-31 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 119 / 3e-31 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10012658 pacid=23156098 polypeptide=Lus10012658 locus=Lus10012658.g ID=Lus10012658.BGIv1.0 annot-version=v1.0 ATGGAAGCTAGGGTTGGCGTGGTTGTGGAGGGTGGCCAGAGAGCTCTCAATTCCGTGGCCGCCGGAACCGTCGTCGACGCTGCTGGTTCCCGCAAGTTAC TCCAACAGCATCAATCCCATGTCGGAAGCCTCCAGTACATGCTCGCCGGTGGAAACGCCGGCGCCTTTAGCAAAACCTGCACTACTCCCATGGCTCGCCT CACAATCCTTTTCCAGTCCACCATTTCACGAGAAGCTTTGCGTATATTTAACGAGGAAGGGTTTAGAGCAATTTGGAGAGGAAATCTAGTCACAATTGCT CACCGTGTTCCTTATTCCGCAGTGAACTTCTATGCCTATGAACAATTTAAGAGTGATCGTTTGCAATCATTTTTCGGCCTGGAGAGACAGGGAGGGAACT TGAAAGCCGATGTAGCTGTATGTTTCGTCGGTAGAGGTTTGGCCGGGGTAACCGCTGCCTCTGCTAGGTATCCATTGGATCTTGCTCGGACTCGTCTGGC AACCCAGAGTATTTTGCATTCGTTCAGTACCATTTTCAAGGAAGAAGAGTTCTTTGGACTGTACAAAGGACTCGGCCCTACACTATTGGGTGTTGGACCA AGCCTAGCCATAGGATTTTGTGTATACGAGCCGAAAGATTCCACTACAATGGTTAGCCTTGGTTGTGGCAGCCTGTCTGGCATTGCTGCTTCAACGGCGA CATTTCCCATCGACCTTGTGCAGACAAGAATGCAGTTAGAAGGAGCTGGTGGTAAAGCTCGTGCTTACTCAGGAGGCTTTCTCGGGACGTTCGGGCACAT ATTCAAGAACGAAGGCTTGCGAGGCTCGTACATCCTGGGGCGCTAG
AA sequence Show only first row Show all	>Lus10012658 pacid=23156098 polypeptide=Lus10012658 locus=Lus10012658.g ID=Lus10012658.BGIv1.0 annot-version=v1.0 MEARVGVVVEGGQRALNSVAAGTVVDAAGSRKLLQQHQSHVGSLQYMLAGGNAGAFSKTCTTPMARLTILFQSTISREALRIFNEEGFRAIWRGNLVTIA HRVPYSAVNFYAYEQFKSDRLQSFFGLERQGGNLKADVAVCFVGRGLAGVTAASARYPLDLARTRLATQSILHSFSTIFKEEEFFGLYKGLGPTLLGVGP SLAIGFCVYEPKDSTTMVSLGCGSLSGIAASTATFPIDLVQTRMQLEGAGGKARAYSGGFLGTFGHIFKNEGLRGSYILGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53940			Mitochondrial substrate carrie...		Lus10012658 [exp]	0	1
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10035628 [exp]	1.0	0.9643
AT3G44910		ATCHX12	cation/H+ exchanger 12, cation...		Lus10040962 [exp]	2.4	0.8958
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10028979 [exp]	2.8	0.8664
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026828 [exp]	3.2	0.8748
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10035312 [exp]	4.5	0.8752
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10034564 [exp]	4.7	0.8508
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	9.8	0.8805
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10017952 [exp]	13.0	0.8392
AT2G14100		CYP705A13	"cytochrome P450, family 705, ...		Lus10024582 [exp]	13.4	0.8641
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	16.4	0.8674

Compare expression of checked genes

Lus10012658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.