Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 147 / 1e-41 lectin protein kinase family protein (.1) AT5G24080 141 / 2e-40 Protein kinase superfamily protein (.1) AT5G35370 141 / 1e-39 S-locus lectin protein kinase family protein (.1) AT4G00340 138 / 2e-38 RLK4 receptor-like protein kinase 4 (.1) AT2G19130 137 / 5e-38 S-locus lectin protein kinase family protein (.1) AT4G32300 136 / 7e-38 SD2-5 S-domain-2 5 (.1) AT5G60900 122 / 7e-33 RLK1 receptor-like protein kinase 1 (.1) AT5G48940 120 / 3e-32 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G66910 119 / 6e-32 Protein kinase superfamily protein (.1) AT4G32710 117 / 6e-32 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024348 [exp] 245 / 4e-77 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 238 / 5e-74 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 228 / 1e-70 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 149 / 3e-42 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10004283 [exp] 137 / 6e-38 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 136 / 1e-37 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031596 [exp] 135 / 2e-37 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 134 / 4e-37 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10043391 [exp] 134 / 6e-37 AT4G32300 795 / 0.0 S-domain-2 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G102500 [exp] 199 / 2e-60 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 199 / 3e-60 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102700 [exp] 197 / 1e-59 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 197 / 1e-59 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 193 / 4e-58 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.013G096300 [exp] 157 / 2e-47 AT1G34300 262 / 2e-80 lectin protein kinase family protein (.1) Potri.013G086100 [exp] 159 / 8e-46 AT4G00340 300 / 1e-89 receptor-like protein kinase 4 (.1) Potri.013G096000 [exp] 155 / 8e-45 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.013G095800 [exp] 155 / 1e-44 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.013G096400 [exp] 155 / 2e-44 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012659 pacid=23156077 polypeptide=Lus10012659 locus=Lus10012659.g ID=Lus10012659.BGIv1.0 annot-version=v1.0 ATGTTCTGGGCAGAGGTTACCACGATCGGGAAGATCAACCATATGAACCTGGTGAGAATATGGGGGTTCTGTTCCGATAACAGGCATATGATGTCGGTGT ATGAGTATCTGAAGCACCAATCACTAGATAATTATCTTTTCTCAAGCAGTGGGACAACCTCTCTCGAGTGGGAAGTAAGGTTCAAGGTTGCTTTGGGGAC GGTGAAAGGATTGGCTTATCTTCACCACGAGTGCCTCGAATGGATCATACATTGCGATGTGAAGCCCAGGAACATACTCTTGGATGACGACTTTGAGCCA AACATTGTTGATTTCGGGCTCGCAAAGTTGTCGCAGAGGAACAACAACAACTCTCAGTTCACCAAGATCAGAGGGACAAAAAGGGTACATGGCTCCAGAG TGGGCTTCAAATCTCCCCATTACAGCGAAGGTCGGCGTGTACAACTATGGAGTTGTGATTCTTGA
AA sequence Show only first row Show all	>Lus10012659 pacid=23156077 polypeptide=Lus10012659 locus=Lus10012659.g ID=Lus10012659.BGIv1.0 annot-version=v1.0 MFWAEVTTIGKINHMNLVRIWGFCSDNRHMMSVYEYLKHQSLDNYLFSSSGTTSLEWEVRFKVALGTVKGLAYLHHECLEWIIHCDVKPRNILLDDDFEP NIVDFGLAKLSQRNNNNSQFTKIRGTKRVHGSRVGFKSPHYSEGRRVQLWSCDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34300			lectin protein kinase family p...		Lus10012659 [exp]	0	1
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10037585 [exp]	5.4	0.9539
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	13.9	0.9441
					Lus10027376 [exp]	16.5	0.9508
AT2G23770			protein kinase family protein ...		Lus10019661 [exp]	20.9	0.9496
					Lus10027915 [exp]	21.6	0.9407
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030462 [exp]	22.4	0.9383
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10012609 [exp]	22.6	0.9325
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	23.7	0.9501
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021028 [exp]	27.6	0.9458
					Lus10031841 [exp]	29.1	0.9447

Compare expression of checked genes

Lus10012659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.