Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53960 681 / 0 Major facilitator superfamily protein (.1) AT2G37900 669 / 0 Major facilitator superfamily protein (.1) AT3G54450 392 / 1e-130 Major facilitator superfamily protein (.1) AT5G01180 388 / 7e-129 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 382 / 2e-126 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G40460 373 / 7e-123 Major facilitator superfamily protein (.1) AT2G02040 367 / 2e-120 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G46040 361 / 3e-118 Major facilitator superfamily protein (.1) AT5G46050 360 / 8e-118 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT2G02020 357 / 3e-117 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024340 [exp] 966 / 0 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10003614 [exp] 395 / 2e-131 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 391 / 1e-129 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 391 / 1e-129 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 390 / 2e-129 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011055 [exp] 389 / 6e-129 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 382 / 2e-126 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 381 / 7e-126 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10039521 [exp] 380 / 3e-125 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092000 [exp] 788 / 0 AT2G37900 777 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103500 [exp] 776 / 0 AT2G37900 776 / 0.0 Major facilitator superfamily protein (.1) Potri.008G061100 [exp] 644 / 0 AT3G53960 697 / 0.0 Major facilitator superfamily protein (.1) Potri.001G027100 [exp] 400 / 2e-133 AT3G54450 695 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 395 / 3e-131 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.013G107050 [exp] 394 / 3e-131 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.T124706 [exp] 390 / 6e-130 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 390 / 8e-130 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1) Potri.008G170100 [exp] 389 / 5e-129 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 383 / 1e-126 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10012663 pacid=23156076 polypeptide=Lus10012663 locus=Lus10012663.g ID=Lus10012663.BGIv1.0 annot-version=v1.0 ATGGAGGTTCAAAGGGTTGATAATCTTAAAGATGAGAAATGGGTTCATGACTCTTCTGTGGATCATAAAGGCAGGATTCCTCTTCGAGATGTCACCGGTG CTTGGAAAGCTTCCCTTTTCATCATCGTGATCGAATTTAGCGAGAGGCTGAGTTACTTTGGGATAGCGACCAGCTTGATCATTTACCTCTCCAAGGTCAT TCAACAAGACATCAAGACCGCCGCCCGGAGCGTCAATTACTGGTTCGGCGTCACCACCTTGATGCCCCTTCTAGGCGGCTTTGTCGCTGATTCTTACTTG GGCCAATACCCCACTGTTTTCTTCTCCTCCATTATCTATCTCTTCGGACTAATTCTGCTAACGATGTCGTGGTTCGTCCCAAGTTTGAAGCCATGCGGCG GCGGAGGCGGTGGCGGTACAGTGTGCCACAAGCCCAGCAAGGTACACGAAATAACATTCTTCATCGCTATTTACCTGATCTCCCTCGGCACCGGCGGGCA CAAGCCGGCGCTGGAGAGCTTCGGTGCCGTTCAATTCGACGCCGACCACCAGGGGGAGCGGCGGAAGAAGATGTCGTATTTCAATTGGTGGAACTTCGGG CTGTGCTGTGGACTCCTACTTGGTGTCACGGTGATCGTGTACATTCAAGACCACGTGAGTTGGGGTGCGACCGATGTTATCCTGGCGGTCATTATGGGCA TCTCCCTTGCTATCTTCATCGTCGGCCGTCCGTTCTATCGCTACCGCGTCCCCACCGGAAGCCCGCTAACCCCAATGCTGCAGGCAGCAATAGTGGAAGA CAGAGGAATTCCAACCGTAGCCGCCGCCGAGAAACAAAGTCCATGGAGACTATCAACCGTGACAAGAGTCGAAGAATTGAAGCTGCTTTGCAACATCTTC CCAATCTGGCTAGCCACAATAACCTTCGGACTAACCGTAGCACAAGGATCCACATTCTTCATCAAACAATGCACAATGCTCGACCGTAACATAGGAAACG GATTCCTAATCCCGCCAGCCTCAATCTTTTCCCTAGCAGCAATCGGGATGATATTCACCGTCACACTCTACGAAAAACTCCTCATACCACTCCTCAGAAG AGCCACAGGCAACGAACGTGGAATCAAGATCCTCCAACGAATTGGGATCGGGATGATCTTCTCCATCGCCACCATGACTGTGGCGGCCCTAGTGGAGAGG AAGAGGCTCTCGGTCGTTGACCGAGAGAATTCCTCTGTCTCGATGAGCGCATTTTGGCTGGCTCCGCAATTTTTTATACTCGGCATTGGAGATGGCTTCA CCCTTGTAGGTCTTCAGGAGTATTTTTACGACCAGGTTCCAGACTCTATGAGGAGCTTGGGGATTGCTTTTTACCTGAGCGTGATCGGGGCAGGGAACTT TGTGAGCAGTGTGTTGATAACGGTTGTGGACCAGGTGACAGAGAGGAGTAGTAACGGAGGCGGGAAGAGCTGGTTCGGGAAGGATTTGAATAGTAGTCGG TTGGATAATTTCTATTGGCTGCTGGCGGGATTATCAGCGGCTAATTTGGTGGTGTATGTAGTGCTGGCTAGGCGGTATGAGTACAAGAATGTGCAGAGGA GTGGTGTGGTTGCGGCGGATTGCGAGGATGATCACCATGATTGGGCTTGA
AA sequence Show only first row Show all	>Lus10012663 pacid=23156076 polypeptide=Lus10012663 locus=Lus10012663.g ID=Lus10012663.BGIv1.0 annot-version=v1.0 MEVQRVDNLKDEKWVHDSSVDHKGRIPLRDVTGAWKASLFIIVIEFSERLSYFGIATSLIIYLSKVIQQDIKTAARSVNYWFGVTTLMPLLGGFVADSYL GQYPTVFFSSIIYLFGLILLTMSWFVPSLKPCGGGGGGGTVCHKPSKVHEITFFIAIYLISLGTGGHKPALESFGAVQFDADHQGERRKKMSYFNWWNFG LCCGLLLGVTVIVYIQDHVSWGATDVILAVIMGISLAIFIVGRPFYRYRVPTGSPLTPMLQAAIVEDRGIPTVAAAEKQSPWRLSTVTRVEELKLLCNIF PIWLATITFGLTVAQGSTFFIKQCTMLDRNIGNGFLIPPASIFSLAAIGMIFTVTLYEKLLIPLLRRATGNERGIKILQRIGIGMIFSIATMTVAALVER KRLSVVDRENSSVSMSAFWLAPQFFILGIGDGFTLVGLQEYFYDQVPDSMRSLGIAFYLSVIGAGNFVSSVLITVVDQVTERSSNGGGKSWFGKDLNSSR LDNFYWLLAGLSAANLVVYVVLARRYEYKNVQRSGVVAADCEDDHHDWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	0	1
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	1.7	0.9697
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037665 [exp]	3.3	0.9416
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	4.2	0.9692
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	4.9	0.9686
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	6.3	0.9643
					Lus10041251 [exp]	6.7	0.9609
					Lus10036400 [exp]	7.7	0.8995
AT1G49000			unknown protein		Lus10032453 [exp]	8.7	0.9263
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042012 [exp]	9.5	0.8825
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10007907 [exp]	9.8	0.9436

Compare expression of checked genes

Lus10012663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.