Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02630 486 / 9e-172 Protein kinase superfamily protein (.1) AT1G01540 482 / 3e-170 Protein kinase superfamily protein (.1.2) AT4G01330 478 / 9e-169 Protein kinase superfamily protein (.1.2) AT4G34500 445 / 3e-156 Protein kinase superfamily protein (.1) AT3G59110 429 / 5e-149 Protein kinase superfamily protein (.1) AT2G42960 417 / 2e-144 Protein kinase superfamily protein (.1) AT5G18500 408 / 8e-141 Protein kinase superfamily protein (.1.2) AT1G09440 404 / 1e-139 Protein kinase superfamily protein (.1) AT1G56720 404 / 2e-139 Protein kinase superfamily protein (.1.2.3) AT3G17420 399 / 8e-138 GPK1 glyoxysomal protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041593 [exp] 671 / 0 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018722 [exp] 507 / 1e-179 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 507 / 3e-179 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10007919 [exp] 479 / 9e-169 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036386 [exp] 475 / 2e-167 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001423 [exp] 434 / 7e-151 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 444 / 1e-149 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10040459 [exp] 423 / 8e-148 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 429 / 2e-147 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026100 [exp] 516 / 0 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 481 / 9e-170 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G139500 [exp] 459 / 2e-161 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 451 / 7e-158 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 451 / 1e-157 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 430 / 3e-149 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 426 / 8e-148 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 417 / 4e-144 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 416 / 7e-144 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G001600 [exp] 402 / 8e-139 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012664 pacid=23156097 polypeptide=Lus10012664 locus=Lus10012664.g ID=Lus10012664.BGIv1.0 annot-version=v1.0 ATGGTGGTCCCGGATGTGTCCCACTTGGGGTGGGGACATTGGTACACCCTGCGTGAGCTGGAAGAAGCTACCAATTGTTTTGCCGACAGCAATGTCGTCG GGGAAGGAGGCTACGGCATCGTTTACCACGGCGTTTTGCAGGATGGCGGCCAGGTGGCTGTAAAAAATTTGCTTAATAACAGGGGACAGGCGGAAAGGGA ATTCAAGGTTGAAGTGGAAGCAATTGGAAGGGTCCGACATAAGAATTTAGTGAGGCTGCTTGGCTATTGTGCAGAAGGAGCTCGAAGGATGTTGGTTTAT GAGTATGTGAACAATGGCAACTTGGAGCAGTGGCTTCATGGAGAGGTAGGGCCTTGCAGCCCTCTTAGTTGGGATATGAGAATGAACATTATTTTAGGAG CTGCTAAAGGGTTAGCTTACCTTCACGAAGGGCTTGAACCGAAAGTCGTCCACAGGGATGTGAAATCAAGCAACATTTTGCTTGATCAGCTGTGGAATGC CAAGGTCTCAGATTTTGGTCTGGCCAAGCTCCTTTGCTCCGAGAGGAGTTACATTACAACCAGGGTTATGGGAACATTCGGGTATGTAGCTCCGGAATAT GCTAGTACAGGAATGTTGAATGAGAGCAGTGATGTTTACAGCTTTGGGATTCTAGTCATGGAGATTATACGTGGGAGGAACCCAGTTGATTACGCCAGGC CTCCTGAAGAGGTGAACTTAGTTGATTGGATAAAGATGGTTACAAGCAGAAATGCAGAAGGGGTGTTGGATCCTAGACTATCAGAAAAACCAGCTTCAAG GGCATTGAAGAGGGCTCTTTTGGTAGCTCTCCGTTGTGTTGATCCAAACTCACAGAAACGACCCAAAATGGGACACATTGTACATATGCTAGAGGCTGAT GATTCCTTCAGAGAAGATCGGAGAGCTCCTGCAAGTGTACGGAATTGCAGAGTGAAAGATGGAGTGACAGAATCAGATGCTGGAGTTAGCAAAAGTGGTC CTGAAGGTGAGGTGGGAGCTATAGAGGCAAGATAG
AA sequence Show only first row Show all	>Lus10012664 pacid=23156097 polypeptide=Lus10012664 locus=Lus10012664.g ID=Lus10012664.BGIv1.0 annot-version=v1.0 MVVPDVSHLGWGHWYTLRELEEATNCFADSNVVGEGGYGIVYHGVLQDGGQVAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGARRMLVY EYVNNGNLEQWLHGEVGPCSPLSWDMRMNIILGAAKGLAYLHEGLEPKVVHRDVKSSNILLDQLWNAKVSDFGLAKLLCSERSYITTRVMGTFGYVAPEY ASTGMLNESSDVYSFGILVMEIIRGRNPVDYARPPEEVNLVDWIKMVTSRNAEGVLDPRLSEKPASRALKRALLVALRCVDPNSQKRPKMGHIVHMLEAD DSFREDRRAPASVRNCRVKDGVTESDAGVSKSGPEGEVGAIEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02630			Protein kinase superfamily pro...		Lus10012664 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009623 [exp]	6.6	0.8784
AT4G01330			Protein kinase superfamily pro...		Lus10041593 [exp]	12.6	0.8752
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	13.6	0.8612
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10008627 [exp]	15.0	0.8706
					Lus10019921 [exp]	16.5	0.8361
AT1G23965			unknown protein		Lus10030844 [exp]	19.7	0.8507
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009628 [exp]	21.9	0.8755
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	27.3	0.8235
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	27.8	0.8327
AT5G23160			unknown protein		Lus10013437 [exp]	29.7	0.8476

Compare expression of checked genes

Lus10012664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.