Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49740 263 / 5e-88 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 255 / 4e-84 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 253 / 2e-83 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 243 / 4e-79 PLC-like phosphodiesterases superfamily protein (.1) AT1G13680 204 / 3e-65 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019339 [exp] 304 / 1e-102 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10019843 [exp] 279 / 2e-93 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 278 / 7e-93 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 244 / 9e-80 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10012600 [exp] 235 / 1e-76 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10035130 [exp] 233 / 8e-76 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 231 / 3e-75 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 217 / 1e-69 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10041594 [exp] 101 / 1e-27 AT1G49740 122 / 1e-34 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140200 [exp] 280 / 1e-93 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 276 / 1e-92 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 273 / 4e-91 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 260 / 3e-88 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1) Potri.017G098900 [exp] 240 / 6e-79 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 242 / 7e-79 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.011G144900 [exp] 240 / 1e-78 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 241 / 5e-78 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 238 / 8e-78 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012665 pacid=23156095 polypeptide=Lus10012665 locus=Lus10012665.g ID=Lus10012665.BGIv1.0 annot-version=v1.0 ATGAGTGCAAGGAAGTTACAGTTCGAAAATTTGCGACTGCATCTACCAACTCAGAAAAGGGTGAAAGGTCTTCCCTTCAACAAGTACTCATGGCTTACCA CGCACAACTCTTACGCAATGATGGGGGCAAGTTCGCCTCTGAGATCACTTCTTCTCTCCCCCAGGAACCAAGAGGATACAGTCACCAGCCAATTGAATAA TGGAATTCGAGGCCTTATGCTTGATATGTATGACTTCAACAATGGTATCTGGCTATGTCACTCCTTTGGTGGCCAATGTTACAACTACACGGCTTTCAGG CCAGCAGTGGATATCCTTCGAGAGGTTGCAACTTTTCTGGGTACAAATCCATCAGAGATCGTCACCATCTTCATTGAAGATTATGTGACATCCCCAAACG GTTTGACCAAGATCTTTAATGACGCTGCTTTATCCAAATACCTTTTTCCAATAACAAGCATGCCAAAGAATGGTGGAGATTGGCCTACAGTGGATGACAT GGTGAAAAAGAATCAACGGCTTTTGGTCTTCTCCTCCAAAGCCGAGAAAGAGGCTTCTGAAGGGTTTGCATATACATGGAGATATGTATTGGAAACTCAG TGTGAGTTTGAATTCCCCCTTGTCTAG
AA sequence Show only first row Show all	>Lus10012665 pacid=23156095 polypeptide=Lus10012665 locus=Lus10012665.g ID=Lus10012665.BGIv1.0 annot-version=v1.0 MSARKLQFENLRLHLPTQKRVKGLPFNKYSWLTTHNSYAMMGASSPLRSLLLSPRNQEDTVTSQLNNGIRGLMLDMYDFNNGIWLCHSFGGQCYNYTAFR PAVDILREVATFLGTNPSEIVTIFIEDYVTSPNGLTKIFNDAALSKYLFPITSMPKNGGDWPTVDDMVKKNQRLLVFSSKAEKEASEGFAYTWRYVLETQ CEFEFPLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	0	1
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	3.9	0.8303
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	6.0	0.7729
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	6.0	0.7961
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	9.2	0.8203
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	10.2	0.7752
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	11.5	0.7763
					Lus10036643 [exp]	12.1	0.6593
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	13.7	0.7722
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10042913 [exp]	13.9	0.7910
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	16.0	0.7654

Compare expression of checked genes

Lus10012665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.