Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18060 181 / 5e-57 unknown protein AT1G41830 63 / 2e-11 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21850 62 / 8e-11 SKS8 SKU5 similar 8 (.1) AT1G76160 60 / 3e-10 SKS5 SKU5 similar 5 (.1) AT1G21860 60 / 4e-10 SKS7 SKU5 similar 7 (.1) AT4G28090 47 / 6e-06 SKS10 SKU5 similar 10 (.1) AT4G38420 47 / 9e-06 SKS9 SKU5 similar 9 (.1) AT5G66920 43 / 0.0001 SKS17 SKU5 similar 17 (.1) AT1G55560 42 / 0.0003 SKS14 SKU5 similar 14 (.1) AT1G75790 42 / 0.0004 SKS18 SKU5 similar 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041995 [exp] 251 / 1e-83 AT1G18060 271 / 4e-92 unknown protein Lus10017999 [exp] 248 / 2e-82 AT1G18060 271 / 3e-92 unknown protein Lus10034560 [exp] 79 / 2e-16 AT1G76160 894 / 0.0 SKU5 similar 5 (.1) Lus10021832 [exp] 79 / 2e-16 AT1G76160 865 / 0.0 SKU5 similar 5 (.1) Lus10021238 [exp] 70 / 2e-13 AT1G76160 892 / 0.0 SKU5 similar 5 (.1) Lus10005649 [exp] 70 / 2e-13 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10030045 [exp] 55 / 2e-08 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10035282 [exp] 55 / 2e-08 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10025107 [exp] 44 / 6e-05 AT1G41830 645 / 0.0 SKU5 SIMILAR 6, SKU5-similar 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052300 [exp] 196 / 3e-62 AT1G18060 295 / 1e-101 unknown protein Potri.002G013700 [exp] 66 / 4e-12 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 66 / 5e-12 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 59 / 9e-10 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 57 / 3e-09 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.004G180500 [exp] 57 / 5e-09 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 56 / 6e-09 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.012G126400 [exp] 42 / 0.0002 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.003G224100 [exp] 41 / 0.0005 AT1G55570 855 / 0.0 SKU5 similar 12 (.1) Potri.002G021000 [exp] 41 / 0.0006 AT1G75790 670 / 0.0 SKU5 similar 18 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012667 pacid=23156085 polypeptide=Lus10012667 locus=Lus10012667.g ID=Lus10012667.BGIv1.0 annot-version=v1.0 ATGGTTGTCGAGAAGGTGAAACTGCTGAAGAAAGCTGCAAAGACGAAGAAAGTCGCAGCGGGGAAGATTTTGGAAGCTCTAGCAGTGATGGAAAAGTCCA AGATTAATCTCTCTGGTTTCCTTCAAACTCTCAGGGACGATGAATCCCCCGGCCGCACTTGGATGCTCGTCTTCACCGCTGATCAGCAATACAAGAGTCC CAAGTATTTCCCTATTACTGCAGTCCAGAGGTTTGATGCTGCCGGCGAGAGGATCGAGAACGGAGTGGATCTCAGGCCACTCGGATGGCTCACATTCGAA GGGAAGCTCGCATGGACCAAGAAGAGGGTATTGGCATTCATCTTGGAGCGAATACGCATCAAGATCGGATTCGGGCAGGAAGGAGATAGGGAACCCACCA TCAAGAGTGATCCTTTCTTCGTCTGGTTTTATATCAACGAGGAAATTGCTTTCGCTAGAGGTAGGATTGGCGGCACTGCTTTCTGGTGCAGATTGTGCAT ATACATTGCTCTTTCTTTTCATTACCATGAGTACTTAGCTCATGGGGGATGTTGGGAAGTTAACATATTAGTTATAGTGTTATGTGATTACACCATTCTC ATCCACGATTGGTACTCGTTCAATTACATGGATTTGCATGATCAATTAGATGGTGGTCACAAGCTACCTCTAACTAATGGCATCCTCATCAATAGTCGCG GATCCAACGGCTACAGTCTCAACGTAGAGCACATAGGCCGACAGTGGATCGATCCTTAA
AA sequence Show only first row Show all	>Lus10012667 pacid=23156085 polypeptide=Lus10012667 locus=Lus10012667.g ID=Lus10012667.BGIv1.0 annot-version=v1.0 MVVEKVKLLKKAAKTKKVAAGKILEALAVMEKSKINLSGFLQTLRDDESPGRTWMLVFTADQQYKSPKYFPITAVQRFDAAGERIENGVDLRPLGWLTFE GKLAWTKKRVLAFILERIRIKIGFGQEGDREPTIKSDPFFVWFYINEEIAFARGRIGGTAFWCRLCIYIALSFHYHEYLAHGGCWEVNILVIVLCDYTIL IHDWYSFNYMDLHDQLDGGHKLPLTNGILINSRGSNGYSLNVEHIGRQWIDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18060			unknown protein		Lus10012667 [exp]	0	1
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	2.4	0.8300
					Lus10032721 [exp]	5.3	0.7589
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	5.3	0.7970
AT2G27190		ATPAP12	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024299 [exp]	5.7	0.7389
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10000717 [exp]	13.7	0.7567
AT1G54680			unknown protein		Lus10033821 [exp]	17.3	0.8066
AT4G01995			unknown protein		Lus10016264 [exp]	17.5	0.7698
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	19.4	0.8072
					Lus10029656 [exp]	20.9	0.7942
AT3G13550		EMB144, COP10, ...	FUSCA 9, EMBRYO DEFECTIVE 144,...		Lus10034996 [exp]	21.5	0.7518

Compare expression of checked genes

Lus10012667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.