Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 347 / 4e-119 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 341 / 2e-116 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 335 / 2e-114 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT5G55090 209 / 1e-63 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT4G26890 207 / 6e-63 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT2G32510 202 / 8e-62 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT1G07150 199 / 2e-59 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT1G05100 194 / 4e-59 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT2G30040 180 / 1e-52 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT3G45670 162 / 1e-46 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019340 [exp] 359 / 2e-123 AT5G67080 306 / 6e-103 mitogen-activated protein kinase kinase kinase 19 (.1) Lus10022951 [exp] 191 / 1e-56 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10034288 [exp] 185 / 5e-56 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034285 [exp] 185 / 5e-56 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10030042 [exp] 184 / 2e-54 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10026894 [exp] 179 / 6e-54 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 178 / 2e-53 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10009364 [exp] 176 / 3e-53 AT5G67080 168 / 1e-50 mitogen-activated protein kinase kinase kinase 19 (.1) Lus10021551 [exp] 181 / 2e-52 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044800 [exp] 399 / 4e-139 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 386 / 3e-134 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 354 / 1e-121 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.003G184200 [exp] 240 / 1e-76 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.001G042400 [exp] 237 / 2e-75 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.004G007700 [exp] 221 / 2e-68 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.011G007400 [exp] 218 / 8e-67 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.009G131100 [exp] 206 / 2e-64 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G130000 [exp] 203 / 1e-62 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.006G181000 [exp] 196 / 6e-60 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012668 pacid=23156091 polypeptide=Lus10012668 locus=Lus10012668.g ID=Lus10012668.BGIv1.0 annot-version=v1.0 ATGGATTGGATTCGAGGAGACTCGCTCGGCTTTGGAAGCTCGTCCATGGTGAATTTTGCGTTTGTTAGAGGTTCACACTCCGGAACTACTCCTCCGGTAA TGGCGGTCAAGTCTTGCAACGCTGGAGACTCCAATTTGCTCAACAACGAGAAACATGTGCTGAATCACATCGGAAATTCGCCGCATATCATCCAATGCTT CGGCGACGATCAGAGCTCTGAGAGAGGCCAGAACCTTCACAATTTGTTCCTGGAGTACGCTTCCGGAGGGAGCTTGGCCGATCACCTCAAGAAATCCGGT GGGAAGCTGTCGGAATACGATGTCAAGAGATACACTAGGTCAGTCCTCAAGGGATTGGATCACATCCATGGGAAAGGGTTTGTCCACTGTGATATCAAGC TTCAGAATCTTTTGATGTTCGATGATGGACAAGTTAAGATTGCCGATTTCGGTTTGGCGAAGAGAAGAGGGGATCAGGATGCTAGAGTCGAAATTCGCGG GACCCCTCTGTTTATGGCGCCAGAATCAGTCAACGAGAACTTGTACGAGCCGCCTTGTGATATCTGGGGATTGGGCTGCACAGTCGTGGAGATGTTGACC GGGAAACCCGCGTGGAATTACAAGCCCGGGACCAACATCATGTCCTTCTTGGTCCGAGTCGTGGGCGGAGACCAGTCACCCGAAATCCCGGAGGAGTTGT CCGAGGAAGGCAAGGATTTCCTCTGTAAGTGCTTCATCAAAGATCCCACTTCCAGATGGACCGCCGCAAAGCTTTTGAACCATTCATTCGTTAAGGATGG GGAGGACGCTAACGGCGCGGCAGCTTGCCTTTCATCGGAGAAAGTGTCGGTGTCACCGCGGTGCCCGTTCGATTTCCATGAGTGGGTATCGCCGGCGAAT CAATCAAAACCGTCAACGGTGGATGCGCTGTTTTCTAGTTGTTGGAGTGAGTCATCATCGCCGGCGGATAGATTCCGGCAGCTGGTGGCATCGGATGAGA AGGCGTGGAGTTGGGGAGATTCAGGGAGTTGGATTGTAGTGAGGTGA
AA sequence Show only first row Show all	>Lus10012668 pacid=23156091 polypeptide=Lus10012668 locus=Lus10012668.g ID=Lus10012668.BGIv1.0 annot-version=v1.0 MDWIRGDSLGFGSSSMVNFAFVRGSHSGTTPPVMAVKSCNAGDSNLLNNEKHVLNHIGNSPHIIQCFGDDQSSERGQNLHNLFLEYASGGSLADHLKKSG GKLSEYDVKRYTRSVLKGLDHIHGKGFVHCDIKLQNLLMFDDGQVKIADFGLAKRRGDQDARVEIRGTPLFMAPESVNENLYEPPCDIWGLGCTVVEMLT GKPAWNYKPGTNIMSFLVRVVGGDQSPEIPEELSEEGKDFLCKCFIKDPTSRWTAAKLLNHSFVKDGEDANGAAACLSSEKVSVSPRCPFDFHEWVSPAN QSKPSTVDALFSSCWSESSSPADRFRQLVASDEKAWSWGDSGSWIVVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10012668 [exp]	0	1
					Lus10034192 [exp]	1.0	0.9684
AT3G05170			Phosphoglycerate mutase family...		Lus10015164 [exp]	2.0	0.9495
AT2G42760			unknown protein		Lus10029248 [exp]	2.4	0.9467
AT3G19540			Protein of unknown function (D...		Lus10028070 [exp]	3.2	0.9521
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10034191 [exp]	3.9	0.9489
					Lus10039474 [exp]	4.2	0.9453
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10035174 [exp]	4.9	0.9454
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	5.7	0.9499
					Lus10025243 [exp]	9.2	0.9370
AT3G03280			unknown protein		Lus10007960 [exp]	10.5	0.9443

Compare expression of checked genes

Lus10012668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.