Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009191 [exp] 251 / 2e-84 ND / Lus10019580 [exp] 213 / 1e-70 ND / Lus10029192 [exp] 210 / 6e-69 ND / Lus10010734 [exp] 214 / 1e-68 AT1G69980 159 / 1e-47 unknown protein Lus10017761 [exp] 177 / 7e-57 ND / Lus10010252 [exp] 174 / 2e-53 ND / Lus10010593 [exp] 158 / 8e-49 ND / Lus10034512 [exp] 153 / 2e-47 ND / Lus10033972 [exp] 152 / 6e-46 AT4G15610 46 / 3e-06 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012669 pacid=23156079 polypeptide=Lus10012669 locus=Lus10012669.g ID=Lus10012669.BGIv1.0 annot-version=v1.0 ATGTCTTCAACTAAGTCCAACAAGAATGTTATGAACAAGTTTCGCCGCCCTGATGAGTCAAAGGATTTGTTCACCTACTTTGGAGAAGAAGTGAAGTGCG ATTTTGAATTTTGTGCAGCGGGACATATGACACTAAAGTTCGAGAAATATTTCAATTATCCTTTCTATAAGTGTAGGTTCGAGAAGAAGTTTGAGGTGGT GTTTGCTGAGAACTCGGTGAGGCGCGAGATGCGAGCTATAATGCAGACGAAGCTTACTGAGAAGGATGCTGAGATTGAAGCTATTCGTGCTGAGCTGGCA CATGATCGTTCTAAATGGCAACGTGAGAGAATAGACATCATACGGTCAAAAGATAGGTACATCCAGACTCTCACTAAAGAGTTGAAGGAAGCAAATATGA TGCTTAGAAGGTTTAGGGTGGTCATAACAGCCAGTGGTAAAAAGCTGCCACTGTTGCCTAAAGTTGCAGCGTCATGGTCAGAAGCTGCTGCCAGCTTAAA TGTGATGGGAAATCCAAGAGATGATTGGATGGAATATGCTGTGGCACATGCTGGTAGAGGGAATATGTTGTGGCATATCCTGTTGCTTACTAGATTTTTT GATCATCGGTGCAAGAAATTTGAGGCAGAGGTTTGTGCTAATGAATATTGGAGTGAGAGGTGTTGTACAACCATGCGTGAGCGTAGTGTCAATGGGAAGA CTCACACGGTGCGGGTATTTGATCACACGGCGGGCTAG
AA sequence Show only first row Show all	>Lus10012669 pacid=23156079 polypeptide=Lus10012669 locus=Lus10012669.g ID=Lus10012669.BGIv1.0 annot-version=v1.0 MSSTKSNKNVMNKFRRPDESKDLFTYFGEEVKCDFEFCAAGHMTLKFEKYFNYPFYKCRFEKKFEVVFAENSVRREMRAIMQTKLTEKDAEIEAIRAELA HDRSKWQRERIDIIRSKDRYIQTLTKELKEANMMLRRFRVVITASGKKLPLLPKVAASWSEAAASLNVMGNPRDDWMEYAVAHAGRGNMLWHILLLTRFF DHRCKKFEAEVCANEYWSERCCTTMRERSVNGKTHTVRVFDHTAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012669 [exp]	0	1
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	2.8	1.0000
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	2.8	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	4.9	1.0000
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	5.5	1.0000
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10040432 [exp]	6.7	1.0000
					Lus10002313 [exp]	7.9	1.0000
					Lus10023520 [exp]	8.5	1.0000
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	9.2	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	10.6	1.0000
					Lus10015681 [exp]	10.8	1.0000

Compare expression of checked genes

Lus10012669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.