Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50330 142 / 4e-42 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67060 139 / 1e-40 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G09750 112 / 2e-30 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00120 100 / 4e-26 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 96 / 2e-23 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G01310 59 / 4e-10 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT5G43175 53 / 2e-08 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27740 53 / 3e-08 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT4G33880 49 / 1e-06 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT5G37800 48 / 1e-06 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042647 [exp] 141 / 3e-41 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 140 / 1e-40 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033488 [exp] 117 / 1e-32 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003500 [exp] 94 / 2e-22 AT3G21330 192 / 5e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009745 [exp] 92 / 1e-21 AT3G21330 112 / 2e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003386 [exp] 64 / 1e-11 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10002213 [exp] 61 / 3e-11 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10033592 [exp] 50 / 4e-07 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10017634 [exp] 49 / 6e-07 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G138900 [exp] 153 / 3e-46 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 152 / 6e-46 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G027300 [exp] 149 / 3e-44 AT5G67060 141 / 6e-41 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G125000 [exp] 141 / 3e-41 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 114 / 4e-31 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G060900 [exp] 113 / 7e-31 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G191800 [exp] 96 / 7e-23 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G120800 [exp] 63 / 3e-12 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.006G102600 [exp] 62 / 4e-12 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.017G126800 [exp] 52 / 1e-07 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012670 pacid=23156088 polypeptide=Lus10012670 locus=Lus10012670.g ID=Lus10012670.BGIv1.0 annot-version=v1.0 ATGGACCTTGACCTAATGATGAAGCAGCAGTCCACATCCTCATCATCAACCACATCCAACGGTGGAGGAGACCCCCCTCACCATAACCACCTGGACATGA TGTCCATGCTGCTCCACTCCGACTTCTCCAACGAAGTCGTTCACCAATTCCATACGGACCACCACCCACACCACCTCCATATTCATAATATTCCTCCTTC CGCCTTTATAGGCACTCCCATTAGTAATTATAATAATATTACCTCTCCGCCCTTTGGATCGGCCTCTTCCTTGGTGGAAAAAAAGAACTCCACAGCTGCT ATAAGGGAGATGATATTCCGGATTGCAGCTATGCAGCCCATCCACATTGATCCGGAGTCAGTGAAGCCCCCCAAGAGGAGGAACGTCAGGATATCAAAGG ACCCTCAGAGTGTGGCTGCGAGGCACCGCCGGGAGCGGATCAGCGAGCGGATCCGGATCCTGCAGAGACTGGTCCCTGGTGGTACCAAGATGGACACTGC TTCCATGTTGGACGAGGCCATTCACTATGTCAAGTTCTTGAAGAAACAGGTCAATACTCTCCAACAGTCTGCCAACAGTAATGTCGGGTTTATGAAGATT AATAATAATTGTGTGCCTTCCTCCAATGGGAATCAAGTGATGCTAGGATCATCCATGCAAATGCTTTGA
AA sequence Show only first row Show all	>Lus10012670 pacid=23156088 polypeptide=Lus10012670 locus=Lus10012670.g ID=Lus10012670.BGIv1.0 annot-version=v1.0 MDLDLMMKQQSTSSSSTTSNGGGDPPHHNHLDMMSMLLHSDFSNEVVHQFHTDHHPHHLHIHNIPPSAFIGTPISNYNNITSPPFGSASSLVEKKNSTAA IREMIFRIAAMQPIHIDPESVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVNTLQQSANSNVGFMKI NNNCVPSSNGNQVMLGSSMQML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10012670 [exp]	0	1
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10028171 [exp]	2.4	0.9471
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10017708 [exp]	2.4	0.9403
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	13.4	0.9506
AT1G07400			HSP20-like chaperones superfam...		Lus10016457 [exp]	17.8	0.9118
AT5G46930			Plant invertase/pectin methyle...		Lus10040119 [exp]	21.6	0.9322
AT3G12880			Plant invertase/pectin methyle...		Lus10031197 [exp]	26.6	0.9363
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	33.2	0.9334
					Lus10028932 [exp]	36.6	0.9327
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10011093 [exp]	37.0	0.9167
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10028908 [exp]	39.5	0.9326

Compare expression of checked genes

Lus10012670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.