Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19270 581 / 0 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT4G19230 518 / 0 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 516 / 0 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT2G29090 486 / 3e-169 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G38970 263 / 9e-83 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT5G05690 259 / 8e-81 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G30180 255 / 2e-79 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT1G05160 255 / 3e-79 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 243 / 1e-74 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT4G36380 234 / 5e-71 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042652 [exp] 552 / 0 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 550 / 0 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 546 / 0 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033308 [exp] 491 / 4e-171 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 489 / 9e-171 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 484 / 1e-168 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10016515 [exp] 452 / 8e-156 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10040785 [exp] 370 / 2e-116 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10037273 [exp] 301 / 2e-98 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140900 [exp] 607 / 0 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 606 / 0 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.014G029100 [exp] 590 / 0 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 585 / 0 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 519 / 0 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.009G033900 [exp] 486 / 2e-169 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.001G242600 [exp] 482 / 1e-167 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.008G067500 [exp] 262 / 4e-82 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 258 / 2e-80 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.005G124000 [exp] 249 / 4e-77 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10012675 pacid=23156084 polypeptide=Lus10012675 locus=Lus10012675.g ID=Lus10012675.BGIv1.0 annot-version=v1.0 ATGGCTAAAAATCTTGGTGCCATTTTCCTTCTAACTCTCCTAGGAATACTAATAACAAGGAGAAAACTGCCGCATCAGTCCAGATTAAACTTGCCTCCTG GCTCAATGGGTTGGCCTATTATTGGAGAAACTCTACGATTGTACTCTCAGCACCCCGATTCCTTCTTTTCGACTAGACAAGCAAGATATGGAGAGATATT CAAAACTCACATACTAGGGTGTCCATGCGTAATGTTGGCTAGTCCTGAAGCCATCAGGTTTGTGATGGTGACACAATCAAAGCTGTTCAAGCCTAGTTAC CCTCCAAGCAAAGAGAGACTAATTGGGCCATCAGCTCTATTTTTCCATCAAGGAAGTTATCATTTTGAAATTAAAAAGCTTGTTCAGGAATCACTTTCGT CACTTGAGGTCATAAAACACATGGTTCCCCACATTGATGCTATTGCTATCTCTGCCTTGGAATCCTGGTCTAGTTGTGCATCAACCGTAAGCACATTTCA CCAAATGAAGCACTTCAGTTTTGATGTTGCTGTTACCGCAATCTTTGGTCAGTTGGGGAGTCACCACAAGGAAAAACTGAAAAGAAACTATTTTTTGCTG GACAGAGGATACAATTGTTTCCCTGTCAATTTTCCTGCAAGTTTGTACAGGAAATCACTAATGGCCAGGGAAATGCTAAGCCGGATTCTCCATGAGATCA TCAAAGAAAGGAAGCAGAAGATGGAGATGAACCGAGATCTGCTGGGTTATCTGCTGAATTTCAAACAAGGAGGCTTGCCCTTGAGTGAGACCCAAATTTC TGACAACATAATTGGAGTGTTGTTTGCTGCTCAGGACACAACTGCAAGCATTTTAACATGGATCCTCAAGTACCTTCACGACAACTTGCAAGTCCTAGAA TCAGTTAAGGAAGAGCAAATAGCAATATACAGATCAAATGAACAAGGGAAAAGACCATTGACATGGTCACATACTAGACAGATGGTGGTCACCAACAGGG TGATAATGGAGAGCATGAGGATGGCAAGTATTATATCCTTCACATTCAGGGAAGCAGTAGTCGATGTTGAATATAAAGGATTCTTGATTCCTAAAGGATG GAAGGTACTGCCATTGTTTCGTAGCCTTCATCATAATTCTGAGTTTTTTCAAGACCCTCGAACGTTTAATCCCTCAAGATTTCAGACGGGGCCGAGACCA AACACATTCATACCATTTGGGAAGGGGGATCATTCATGTCCAGGAAATGAACTTGCTAAGCTAGAGATGCTTATTCTTATACACCATCTTGTCACCAAGT TCAGATGGAAAGTTACTAGAACTGGACAATGTGGTGGAAAAGAGATTGAGTATAGTCCATTCCCAATTCCACAACAGGGGCTCAGAGCCAGGTTTTGGAA AGTCGAGAATAGGAATCCCCATTATTATGAACATGAGCAGCAGCTATCAACCAGGACATGA
AA sequence Show only first row Show all	>Lus10012675 pacid=23156084 polypeptide=Lus10012675 locus=Lus10012675.g ID=Lus10012675.BGIv1.0 annot-version=v1.0 MAKNLGAIFLLTLLGILITRRKLPHQSRLNLPPGSMGWPIIGETLRLYSQHPDSFFSTRQARYGEIFKTHILGCPCVMLASPEAIRFVMVTQSKLFKPSY PPSKERLIGPSALFFHQGSYHFEIKKLVQESLSSLEVIKHMVPHIDAIAISALESWSSCASTVSTFHQMKHFSFDVAVTAIFGQLGSHHKEKLKRNYFLL DRGYNCFPVNFPASLYRKSLMAREMLSRILHEIIKERKQKMEMNRDLLGYLLNFKQGGLPLSETQISDNIIGVLFAAQDTTASILTWILKYLHDNLQVLE SVKEEQIAIYRSNEQGKRPLTWSHTRQMVVTNRVIMESMRMASIISFTFREAVVDVEYKGFLIPKGWKVLPLFRSLHHNSEFFQDPRTFNPSRFQTGPRP NTFIPFGKGDHSCPGNELAKLEMLILIHHLVTKFRWKVTRTGQCGGKEIEYSPFPIPQQGLRARFWKVENRNPHYYEHEQQLSTRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10012675 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015285 [exp]	2.2	0.7909
					Lus10011947 [exp]	21.6	0.7720
AT5G65060	MADS	FCL3, MAF3, AGL...	MADS AFFECTING FLOWERING 3, AG...		Lus10037038 [exp]	36.4	0.6899
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	75.7	0.7401
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10019186 [exp]	78.9	0.7066
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	98.4	0.7134
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	108.0	0.7237
AT5G63180			Pectin lyase-like superfamily ...		Lus10014887 [exp]	119.6	0.7335
AT5G67390			unknown protein		Lus10011531 [exp]	136.4	0.7014
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10012912 [exp]	144.3	0.7177

Compare expression of checked genes

Lus10012675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.