Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39410 166 / 5e-49 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G44745 148 / 3e-43 WRKY WRKY12 WRKY family transcription factor (.1) AT1G69310 115 / 9e-30 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT2G46130 108 / 3e-29 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT5G07100 110 / 6e-29 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT4G18170 113 / 7e-29 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT5G26170 105 / 2e-27 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT4G26640 110 / 5e-27 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT1G64000 105 / 5e-27 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT5G49520 109 / 7e-27 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020832 [exp] 257 / 5e-85 AT4G39410 169 / 3e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10017067 [exp] 119 / 1e-30 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037785 [exp] 116 / 1e-29 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10012322 [exp] 117 / 2e-29 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2) Lus10036401 [exp] 110 / 7e-29 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10036891 [exp] 113 / 1e-28 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10007906 [exp] 108 / 7e-28 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10037094 [exp] 110 / 1e-27 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10012547 [exp] 104 / 1e-27 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086400 [exp] 179 / 3e-55 AT4G39410 184 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.007G078200 [exp] 179 / 5e-55 AT4G39410 189 / 4e-59 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.014G050000 [exp] 152 / 1e-44 AT2G44745 224 / 5e-74 WRKY family transcription factor (.1) Potri.002G138900 [exp] 149 / 1e-43 AT2G44745 224 / 9e-75 WRKY family transcription factor (.1) Potri.008G103300 [exp] 119 / 9e-31 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.010G160100 [exp] 117 / 2e-30 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2) Potri.001G058800 [exp] 113 / 2e-30 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.008G094000 [exp] 116 / 3e-30 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.003G169100 [exp] 110 / 1e-29 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.002G193000 [exp] 113 / 5e-29 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10012678 pacid=23148216 polypeptide=Lus10012678 locus=Lus10012678.g ID=Lus10012678.BGIv1.0 annot-version=v1.0 ATGGTGGCCACTTCTTCTCCTTCCGCCGCCGCCGTCAACAACATCTCTACTCATCATCATCATCACGCCGATCTAGCCTCTCTCCAGAGATCTACTGCTC CCTTACCTAATCTCTGGGGATGGCCGGGGGAGTTGGGGGTAAACAGCAACAAGAGCCGGCCGCCGGAAAACATTAGCGCTAACTACAACAGTTACAACAG TTTAGTGGACAATAGCGATGGAGGAGGAGGCAGCAGCAGCAAAGTGATGAGTAGTAGTAATGTTACTACTACGGCGGCGATGAAGCTGAAGAAGAAGATC GGTATACGAAATAGTGGTGTCGGAGGAGGAGGGTGTAGGAAGAAAGTGAGAGAGCCGAGGTTCAGTTTCAAGACGCTGAGCGAGGAGGTTGACGTGCTCG ATGACGGCTACAAATGGCGGAAGTACGGCCAGAAAGTCGTCAAGAATACTCTACATCCCAGGGGATGGCCGGGGGAGTTGGGGGTAAACAGCAACAAGAG CCGGCCGCCGGAAAACATTAGCGCTAACTACAACAGTTACAACAGTTTAGTGGACAATAGCGATGGAGGAGGAGGCAGCAGCAGCAAAGTGATGAGTAGT AGTAATGTTACTACTACGGCGGCGATGAAGCTGAAGAAGAAGATCGGTATACGAAATAGTGGTGTCGGAGGAGGAGGGTGTAGGAAGAAAGTGAGAGAGC CGAGGTTCAGTTTCAAGACGCTGAGCGAGGAGGTTGACGTGCTCGATGACGGCTACAAATGGCGGAAGTACGGCCAGAAAGTCGTCAAGAATACTCTACA TCCCAGGAGCTACTACAGGTGCACACAGGACAACTGCAGGGTGAAGAAGAGAGTGGAGAGACTAGCTGAGGATCCAAGAATGGTGATAACAACATATGAA GGAAGGCATGCTCATTCACCTTCCCATGATCAAGATGACTCCAATTCCCACTCTCCTACTCATCTCAGCAATTTCTTCTTCTAA
AA sequence Show only first row Show all	>Lus10012678 pacid=23148216 polypeptide=Lus10012678 locus=Lus10012678.g ID=Lus10012678.BGIv1.0 annot-version=v1.0 MVATSSPSAAAVNNISTHHHHHADLASLQRSTAPLPNLWGWPGELGVNSNKSRPPENISANYNSYNSLVDNSDGGGGSSSKVMSSSNVTTTAAMKLKKKI GIRNSGVGGGGCRKKVREPRFSFKTLSEEVDVLDDGYKWRKYGQKVVKNTLHPRGWPGELGVNSNKSRPPENISANYNSYNSLVDNSDGGGGSSSKVMSS SNVTTTAAMKLKKKIGIRNSGVGGGGCRKKVREPRFSFKTLSEEVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYE GRHAHSPSHDQDDSNSHSPTHLSNFFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012678 [exp]	0	1
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020832 [exp]	1.0	0.9882
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	4.2	0.9745
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	4.2	0.9563
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	8.3	0.9742
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	9.6	0.9732
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	9.8	0.9687
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	11.1	0.9451
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	11.2	0.9683
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	11.3	0.9677
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10038930 [exp]	13.0	0.9600

Compare expression of checked genes

Lus10012678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.