Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11925 104 / 3e-29 Stigma-specific Stig1 family protein (.1) AT1G50720 87 / 2e-22 Stigma-specific Stig1 family protein (.1) AT4G26880 69 / 3e-15 Stigma-specific Stig1 family protein (.1) AT5G55110 66 / 3e-14 Stigma-specific Stig1 family protein (.1) AT1G53130 66 / 7e-14 GRI GRIM REAPER, Stigma-specific Stig1 family protein (.1) AT1G50650 58 / 7e-11 Stigma-specific Stig1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020831 [exp] 300 / 3e-106 AT1G11925 100 / 7e-28 Stigma-specific Stig1 family protein (.1) Lus10043047 [exp] 71 / 7e-16 AT1G50720 133 / 3e-40 Stigma-specific Stig1 family protein (.1) Lus10011146 [exp] 67 / 3e-14 AT1G50720 125 / 2e-37 Stigma-specific Stig1 family protein (.1) Lus10011117 [exp] 63 / 1e-12 AT1G50720 117 / 6e-34 Stigma-specific Stig1 family protein (.1) Lus10000696 [exp] 62 / 3e-12 AT1G50650 100 / 3e-26 Stigma-specific Stig1 family protein (.1) Lus10006512 [exp] 60 / 7e-12 AT1G50650 71 / 5e-16 Stigma-specific Stig1 family protein (.1) Lus10041930 [exp] 57 / 7e-11 AT1G53130 152 / 1e-47 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10005544 [exp] 51 / 5e-09 AT1G53130 125 / 6e-38 GRIM REAPER, Stigma-specific Stig1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228100 [exp] 119 / 9e-35 AT1G11925 94 / 2e-25 Stigma-specific Stig1 family protein (.1) Potri.004G007000 [exp] 118 / 2e-34 AT1G11925 96 / 5e-26 Stigma-specific Stig1 family protein (.1) Potri.004G007100 [exp] 117 / 6e-34 AT1G11925 98 / 1e-26 Stigma-specific Stig1 family protein (.1) Potri.004G007200 [exp] 117 / 2e-33 AT1G11925 98 / 5e-26 Stigma-specific Stig1 family protein (.1) Potri.004G006900 [exp] 114 / 8e-33 AT1G11925 108 / 4e-31 Stigma-specific Stig1 family protein (.1) Potri.004G006800 [exp] 113 / 2e-32 AT1G11925 80 / 1e-19 Stigma-specific Stig1 family protein (.1) Potri.004G030900 [exp] 111 / 7e-32 AT1G11925 101 / 4e-28 Stigma-specific Stig1 family protein (.1) Potri.011G008804 [exp] 103 / 1e-28 AT1G11925 98 / 8e-27 Stigma-specific Stig1 family protein (.1) Potri.011G009000 [exp] 102 / 3e-28 AT1G11925 98 / 1e-26 Stigma-specific Stig1 family protein (.1) Potri.011G008932 [exp] 101 / 6e-28 AT1G11925 91 / 4e-24 Stigma-specific Stig1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04885 [flax] [poplar] Stig1 Stigma-specific protein, Stig1
Representative CDS sequence Show only first row Show all	>Lus10012679 pacid=23148234 polypeptide=Lus10012679 locus=Lus10012679.g ID=Lus10012679.BGIv1.0 annot-version=v1.0 ATGAAGAACTTGACGATGCTCTTTACTCTTGTGACGTCGATGGCCGTACTAATCCTGACCACCAACGTTACACCAACAACATCCCAAGCAGAAGCAAACC AACCACTCTTGGTCGGCGACGGCACCGGTAGCCGCTTCCTTCTTGATCAGAAAACATCCTTTTCTGTGGCGGCGGCAGGGGACAACTGGCGGCGGCGCAA GTGTGACAAGTTCCCGACCACATGCTACCTGAGAGGGAGTCCGGGCCCGCATTGCTGTAACAGGAAGTGCGTGGACGTGGCTAAGGATCGAGCCAACTGC GGCAAGTGCGGGAGGAGGTGCGGGTACAGCGAGATATGCTGCGGCGGGAAGTGCGTCAACCCGTCGTTTAACCGGTCGAATTGTGGCGGGTGTGGGAACA AGTGCGATGCTCCTATTGTCGGGGGTCGCAAAAAGCGGGCTTTCTGTGCGTTCGGTCTGTGCAACTATGCGTAG
AA sequence Show only first row Show all	>Lus10012679 pacid=23148234 polypeptide=Lus10012679 locus=Lus10012679.g ID=Lus10012679.BGIv1.0 annot-version=v1.0 MKNLTMLFTLVTSMAVLILTTNVTPTTSQAEANQPLLVGDGTGSRFLLDQKTSFSVAAAGDNWRRRKCDKFPTTCYLRGSPGPHCCNRKCVDVAKDRANC GKCGRRCGYSEICCGGKCVNPSFNRSNCGGCGNKCDAPIVGGRKKRAFCAFGLCNYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11925			Stigma-specific Stig1 family p...		Lus10012679 [exp]	0	1
AT2G28360			SIT4 phosphatase-associated fa...		Lus10016089 [exp]	1.7	0.9348
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	2.2	0.9508
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10003076 [exp]	2.4	0.9441
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	17.0	0.9130
AT2G03820			nonsense-mediated mRNA decay N...		Lus10025109 [exp]	17.2	0.9094
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10035255 [exp]	18.5	0.9222
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	18.7	0.9064
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	20.0	0.9277
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	21.6	0.9011
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10006412 [exp]	23.5	0.9137

Compare expression of checked genes

Lus10012679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.