Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01420 245 / 1e-77 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G23080 231 / 4e-73 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 233 / 5e-73 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT5G57090 211 / 2e-64 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G73590 205 / 2e-62 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT1G77110 171 / 4e-50 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G16530 146 / 4e-42 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT5G15100 139 / 2e-39 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020830 [exp] 213 / 2e-70 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018006 [exp] 206 / 2e-67 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009685 [exp] 210 / 2e-66 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 213 / 4e-65 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 213 / 4e-65 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 211 / 2e-64 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009686 [exp] 189 / 7e-61 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018007 [exp] 186 / 1e-59 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10042004 [exp] 186 / 5e-57 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G129400 [exp] 241 / 6e-76 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 241 / 6e-76 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 219 / 2e-67 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 216 / 7e-67 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 215 / 1e-66 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 214 / 7e-66 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 213 / 2e-65 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.019G052800 [exp] 199 / 6e-63 AT5G16530 471 / 7e-168 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 182 / 2e-54 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.014G146800 [exp] 179 / 1e-53 AT1G23080 239 / 4e-73 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10012680 pacid=23148195 polypeptide=Lus10012680 locus=Lus10012680.g ID=Lus10012680.BGIv1.0 annot-version=v1.0 ATGATAACATGGAAAGATCTCTACACAGTACTAACGGCGGTGGTCCCACTCTACGTCGCCATGATCCTCGCCTATGGCTCCGTCCGGTGGTGGAAGATCT TCTCCCCTGACCAATGCTCCGGCATCAACCGATTCGTCGCAATCTTCGCCGTCCCTCTTCTCTCCTTCCACTTCATCTCCACCAACGACCCTTACGCTAT GAACCTCCGCTTCATCGCGGCCGACACCCTCCAGAAAATCATCATGCTCGTCGCTCTAGCCTTCTGGACGAACCTCACCAAAAACGGCAGCCTCGAGTGG ATGATTACCATTTTCTCCCTCTCAACCTTGCCCAACACCCTCGTCATGGGTATCCCTCTCCTAATCGCCATGTGGCATGTAGCAATGCCTAAAATAATAG AGAAGTCAATCTCCATACTGTCGGATGCTGGCCTCGGAATGGCTATGTTCAGCTTAGGATTGTTCATGGCTTTGCAACCCAAGATAATAGCCTGTGGGAA TTCAGTTGCCGCATTTGCGATGGCGGTTCGGTTTCTAACCGGACCGGCGGTTATGGCTGCTGCTTCCATTGCCGTTGGGCTTCGTGGTACCTTACTCCAT ATCGCCATTGTTCAGGCTGCACTACCGCAGGGTATTGTTCCGTTCGTGTTCGCAAAAGAGTATAACGTTCACCCTCAAATTCTTAGTACTGGGTGA
AA sequence Show only first row Show all	>Lus10012680 pacid=23148195 polypeptide=Lus10012680 locus=Lus10012680.g ID=Lus10012680.BGIv1.0 annot-version=v1.0 MITWKDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNLRFIAADTLQKIIMLVALAFWTNLTKNGSLEW MITIFSLSTLPNTLVMGIPLLIAMWHVAMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVAAFAMAVRFLTGPAVMAAASIAVGLRGTLLH IAIVQAALPQGIVPFVFAKEYNVHPQILSTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	0	1
AT1G25250	C2H2ZnF	ATIDD16	indeterminate(ID)-domain 16 (....		Lus10031314 [exp]	1.4	0.8799
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	1.4	0.8924
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	1.7	0.8772
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	2.2	0.8702
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10040685 [exp]	2.8	0.8705
AT5G40960			Protein of unknown function (D...		Lus10035200 [exp]	3.5	0.8304
AT3G43270			Plant invertase/pectin methyle...		Lus10017375 [exp]	6.3	0.8404
AT3G61940		ATMTPA1, MTPA1	Cation efflux family protein (...		Lus10012604 [exp]	6.9	0.8139
AT3G43270			Plant invertase/pectin methyle...		Lus10010170 [exp]	7.7	0.8625
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020830 [exp]	8.1	0.8288

Compare expression of checked genes

Lus10012680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.