Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15290 433 / 2e-154 3-hydroxyacyl-CoA dehydrogenase family protein (.1) AT4G29010 124 / 1e-31 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G06860 115 / 1e-28 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020828 [exp] 542 / 0 AT3G15290 465 / 4e-167 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10011102 [exp] 123 / 3e-31 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10043224 [exp] 116 / 8e-29 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10037495 [exp] 114 / 4e-28 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10006502 [exp] 111 / 4e-28 AT3G06860 670 / 0.0 multifunctional protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G398600 [exp] 445 / 4e-159 AT3G15290 446 / 9e-160 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Potri.018G082900 [exp] 144 / 2e-38 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.008G220400 [exp] 115 / 8e-29 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.010G011900 [exp] 115 / 8e-29 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF00725 [flax] [poplar] 3HCDH 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF02737 [flax] [poplar] 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10012681 pacid=23148219 polypeptide=Lus10012681 locus=Lus10012681.g ID=Lus10012681.BGIv1.0 annot-version=v1.0 ATGGCGGAGATAAAATCGGTTGGGGTAGTGGGTAGCGGCCAAATGGGCTCCGGCATCGCTCAACTCGCCGCCGTTCATGGCCTCAGCGTCTGCCTTCTTG ATACGGATTCCGATGCTCTGTCCAGATCCAGAGCCTCCATCGCCGCCAATGTTCGCCGGATGGTCTCCAAAGGCCACCTCTCTCAGGCCAGAGGAGACAA TGTTCTGAGGCTTCTAAGCTACACCTCGAATCTTGAAGATTTTCTCGATGCAGATATCGTGATCGAGGCCATTCTCGAATCCGAGGAGGTGAAGAAAATT TTGTTCGGGCAACTTGACAAGATTGTTAAACCTTCTGGCATCTTAGCTTCCAATACGAGTTCCATTTCGATCACTCGTCTTGCGTCTTCAGTCAGCAGAC CTCGCCAGGTAATTGGGATGCATTTCATGAACCCTCCTCCCATAATGAAATTAGTCGAGATCATACGGGGAGCAGACACATCGGACGAGACATTCCTCGC AACCAAGGCCTTGGCGGAAAGGTTCGGGAAGACGGTGATTTGCTCGCAGGACTTCGCAGGGTTCATCGTGAACAGGATCTTGATGCTGATGATAAACGAA GCCTTCTATACTCTGTACACAGGAGTGGCAACAAAGGAAGACATTGATACCGGGATGAAGCTAGGGACAAACCATCCAATGGGTCCACTAGAACTTGCGG ATTTCATCGGACTTGATGTTTGCTTGTCGATCATGAAGGTCCTTCATGCTGGGTTAGGGGACGCCAAGTACGCTCCATGCCCTCTTCTCGTACAGTATGT CGATGCAGGACGCCTTGGTCGAAAACGTGGCCTCGGGGTGTACGACTATCAGAAACCATCTGCACGACTTTGA
AA sequence Show only first row Show all	>Lus10012681 pacid=23148219 polypeptide=Lus10012681 locus=Lus10012681.g ID=Lus10012681.BGIv1.0 annot-version=v1.0 MAEIKSVGVVGSGQMGSGIAQLAAVHGLSVCLLDTDSDALSRSRASIAANVRRMVSKGHLSQARGDNVLRLLSYTSNLEDFLDADIVIEAILESEEVKKI LFGQLDKIVKPSGILASNTSSISITRLASSVSRPRQVIGMHFMNPPPIMKLVEIIRGADTSDETFLATKALAERFGKTVICSQDFAGFIVNRILMLMINE AFYTLYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLHAGLGDAKYAPCPLLVQYVDAGRLGRKRGLGVYDYQKPSARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10012681 [exp]	0	1
AT4G17900			PLATZ transcription factor fam...		Lus10030968 [exp]	2.0	0.9436
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	3.3	0.9212
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	3.9	0.9363
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	5.7	0.9378
AT1G68300			Adenine nucleotide alpha hydro...		Lus10041436 [exp]	6.2	0.9395
AT3G47160			RING/U-box superfamily protein...		Lus10037053 [exp]	6.5	0.9320
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	10.5	0.9216
AT5G66930			unknown protein		Lus10019643 [exp]	11.3	0.9372
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	17.5	0.9258
					Lus10006006 [exp]	19.7	0.9184

Compare expression of checked genes

Lus10012681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.