Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21870 265 / 5e-90 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005794 [exp] 338 / 2e-118 AT2G21870 320 / 2e-111 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2) Lus10006806 [exp] 295 / 1e-92 AT5G17250 1085 / 0.0 Alkaline-phosphatase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085500 [exp] 278 / 6e-95 AT2G21870 322 / 2e-112 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2) Potri.007G079500 [exp] 277 / 2e-94 AT2G21870 343 / 1e-120 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012682 pacid=23148172 polypeptide=Lus10012682 locus=Lus10012682.g ID=Lus10012682.BGIv1.0 annot-version=v1.0 ATGGCGTTAAGCTATCGTCTTTTGTCCAGATCCAGACAGCTCTGTGGCACTCAGATTGTGCTGCAGCAGGAATGTATGGCTCCAGTTCGTTACTTTTCGG CTAAGTCTGAGCCACAGCAGAAAGCTCTAAAGGGAGATGATATGCTCAAGAACATCTTCCTGGACGTGAAGAAAAAATTTGAGACGGCAATGGGAGTGCT ACGACAGGAGAAGATCACCATGGCACCTGAAGATCCAGCTGCAGTTGCTCAATATGCAAATGTCATGAAGAGTGTTAGACAGAAGGCTAATTTGTTATCT GAATCTCAGAGTATAAAGAACGCCATTGAGACAGAAACGAAGGACATTCAAGATGCTCGTACTTACTTATTGACATTGCAGGATATAAGAATCAAGCAGG GTCTCCAGGATGCGCTTGGTGCAGAAGCTATGATGATGGATGCCTTGGAAAACGTTGAGAAAGAACTCAAGAAACCTCTCATGAGGAATGATAAGAAAGG AATGGCACTTCTCATGGCTGAGTTTGACAAGATCAATCAAAAGCTTGGAGTTAGGAGGCAAGACCTACCGAAGTATGAAGAAGAGTTGGAACTCAAACTT GCTAAAGCACAACTGGAGGAGCTGAAGAAGGATGCTCATGAGGCCATGGGAACCCAAAAGAAAAGGGAGGAATTCAAGGACGAGGAAATGCCGGATGTGA AGTCATTGGACATCCGGAACTTCATCTAA
AA sequence Show only first row Show all	>Lus10012682 pacid=23148172 polypeptide=Lus10012682 locus=Lus10012682.g ID=Lus10012682.BGIv1.0 annot-version=v1.0 MALSYRLLSRSRQLCGTQIVLQQECMAPVRYFSAKSEPQQKALKGDDMLKNIFLDVKKKFETAMGVLRQEKITMAPEDPAAVAQYANVMKSVRQKANLLS ESQSIKNAIETETKDIQDARTYLLTLQDIRIKQGLQDALGAEAMMMDALENVEKELKKPLMRNDKKGMALLMAEFDKINQKLGVRRQDLPKYEEELELKL AKAQLEELKKDAHEAMGTQKKREEFKDEEMPDVKSLDIRNFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10012682 [exp]	0	1
AT1G47278			unknown protein		Lus10016567 [exp]	4.2	0.7652
AT5G59750			DHBP synthase RibB-like alpha/...		Lus10040865 [exp]	4.6	0.7648
AT1G47278			unknown protein		Lus10040837 [exp]	6.0	0.7337
AT1G08580			unknown protein		Lus10040441 [exp]	7.1	0.7768
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Lus10019500 [exp]	9.5	0.7487
AT3G10950			Zinc-binding ribosomal protein...		Lus10011359 [exp]	11.8	0.7566
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	15.5	0.7115
AT5G02280			SNARE-like superfamily protein...		Lus10010836 [exp]	26.7	0.7282
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	26.7	0.7289
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10034351 [exp]	29.4	0.6057

Compare expression of checked genes

Lus10012682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.