Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10500 203 / 3e-67 ATCPISCA chloroplast-localized ISCA-like protein (.1) AT2G16710 75 / 1e-17 Iron-sulphur cluster biosynthesis family protein (.1.2.3) AT2G36260 70 / 6e-16 Iron-sulphur cluster biosynthesis family protein (.1) AT5G03905 67 / 3e-14 Iron-sulphur cluster biosynthesis family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020827 [exp] 284 / 3e-99 AT1G10500 216 / 1e-72 chloroplast-localized ISCA-like protein (.1) Lus10014201 [exp] 65 / 2e-13 AT5G03905 204 / 2e-68 Iron-sulphur cluster biosynthesis family protein (.1) Lus10017048 [exp] 65 / 3e-13 AT2G16710 220 / 5e-75 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Lus10022714 [exp] 64 / 6e-13 AT5G03905 201 / 3e-67 Iron-sulphur cluster biosynthesis family protein (.1) Lus10021368 [exp] 56 / 2e-09 AT2G16710 211 / 3e-69 Iron-sulphur cluster biosynthesis family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079600 [exp] 209 / 1e-69 AT1G10500 210 / 5e-70 chloroplast-localized ISCA-like protein (.1) Potri.005G085400 [exp] 206 / 1e-68 AT1G10500 227 / 9e-77 chloroplast-localized ISCA-like protein (.1) Potri.010G238800 [exp] 74 / 3e-17 AT2G16710 211 / 2e-71 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.008G020400 [exp] 74 / 3e-17 AT2G16710 197 / 5e-66 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.006G084300 [exp] 69 / 7e-15 AT5G03905 199 / 2e-66 Iron-sulphur cluster biosynthesis family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01521 [flax] [poplar] Fe-S_biosyn Iron-sulphur cluster biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10012683 pacid=23148173 polypeptide=Lus10012683 locus=Lus10012683.g ID=Lus10012683.BGIv1.0 annot-version=v1.0 ATGGCGATGGCGTTCTCTCCGTCGACAACCACTGCCCACAAGTCCTCTTCATCTCCCTGTCTTCTCCGCCTTCCCAATCGCTCTTCACCTCCGAATTCAG TCTCCTTCAGATTCTTCTCCACGACCAACATATGCCGCAGATCGTCTCTGTCCGTTAGGTCGTCGGCTTCAGCCTCAGTTGCTCCGCCGTCTGCCGGGGG AGTGGCGCCGGCGGTATCGTTGACTGAGACTGCGTTGAAGCACTTGAATCGGATGAGGAGTGACCGTGGTGAGGATTTGTGCTTGAGAATTGGGGTGAAG CAAGGTGGGTGCTCCGGTATGTCTTACACCATGGACTTCGAGAGTAGGGATAACGCTAGAGCTGACGATTCTATTATTGAATATGACGGCTTTGTCATCG TTTGTGATCCAAAGAGCCTCCTTTTCATGTTCGGGATGCAACTGGATTACAGCGATGCGCTCATCGGAGGTGGCTTCTCTTTCAAGAACCCGAACGCTAC ACAGACGTGTGGTTGTGGTAAATCTTTTGCAGCAGACATGTGA
AA sequence Show only first row Show all	>Lus10012683 pacid=23148173 polypeptide=Lus10012683 locus=Lus10012683.g ID=Lus10012683.BGIv1.0 annot-version=v1.0 MAMAFSPSTTTAHKSSSSPCLLRLPNRSSPPNSVSFRFFSTTNICRRSSLSVRSSASASVAPPSAGGVAPAVSLTETALKHLNRMRSDRGEDLCLRIGVK QGGCSGMSYTMDFESRDNARADDSIIEYDGFVIVCDPKSLLFMFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAADM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10012683 [exp]	0	1
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	1.0	0.8466
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10037518 [exp]	6.6	0.8336
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040982 [exp]	6.9	0.8214
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	7.6	0.7903
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	9.2	0.8347
AT5G61820			unknown protein		Lus10042158 [exp]	9.9	0.8123
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	11.0	0.8122
AT4G17440			Protein of unknown function (D...		Lus10004378 [exp]	11.2	0.8235
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021574 [exp]	12.4	0.8352
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014879 [exp]	16.1	0.8130

Compare expression of checked genes

Lus10012683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.