Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) AT5G64120 392 / 2e-137 Peroxidase superfamily protein (.1) AT5G39580 380 / 2e-132 Peroxidase superfamily protein (.1.2) AT5G64110 362 / 3e-125 Peroxidase superfamily protein (.1) AT5G64100 337 / 9e-116 Peroxidase superfamily protein (.1) AT4G25980 299 / 3e-100 Peroxidase superfamily protein (.1) AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) AT4G11290 280 / 3e-93 Peroxidase superfamily protein (.1) AT3G01190 276 / 1e-91 Peroxidase superfamily protein (.1) AT1G77100 276 / 2e-91 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020826 [exp] 592 / 0 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10007051 [exp] 421 / 1e-148 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10007052 [exp] 416 / 1e-146 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10015555 [exp] 359 / 4e-124 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10020421 [exp] 281 / 2e-94 AT2G41480 266 / 9e-89 Peroxidase superfamily protein (.1) Lus10026748 [exp] 283 / 4e-94 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 285 / 2e-93 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10031548 [exp] 280 / 5e-93 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 280 / 5e-93 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125000 [exp] 468 / 2e-167 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 390 / 1e-136 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 377 / 1e-131 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 284 / 1e-94 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 282 / 5e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 282 / 5e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 282 / 5e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 282 / 5e-94 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 278 / 1e-92 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 278 / 3e-92 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10012684 pacid=23148196 polypeptide=Lus10012684 locus=Lus10012684.g ID=Lus10012684.BGIv1.0 annot-version=v1.0 ATGGCCACCTCAGCACTCATACTCACCCTTGTCCTAGCAATGTCTGCCCTAACAATCATGGTCCACGGGCAGGGAACCCGTGTCGGGTTCTACTCAACCA GCTGCCCACGGGTCGAGACCATAGTCCGAACCGCGGTCCAATCCCACTTCGCCTCCGACCCTACGGTTGCTGCAGGCTTACTCAGGATGCATTTCCACGA CTGTTTCGTGCAGGGCTGCGACGCTTCGGTCCTTATTTTGGGAACCGGTACCGAGAGAACCGCCGTCCCTAATCAGTCCCTCAACGGCTTCTCAACCATT GATGACGCCAAGACGCAGCTCGAAGCTGCTTGTCCCGGCGTCGTCTCTTGCGCTGACATCCTTGCTCTCGCTGCTCGCGACTCCGTCGTTTTGACAAGCG GACTAAGCTGGCCAGTTCCCACGGGGAGAAGAGATGGCAGAGTTTCAGTCCAACAGGAAGCTGACGACAATTTGCCAGGACCAGCGGACACCGTCGATTC GCAGATCCAGCAGTTTAGCACTCTGGGCCTCAACGTTCAGGATCTCGTCACGCTCTCAGCTGGACACACTCTAGGGACAGCATCCTGCGCCACATTCAGC TACAGGCTCTACAACTACAACAACACGGGTGGACCCGACCCGTCGATCGCCCCCGCATTCCTCACCACGCTCCGGTCATTCTGTCCCCAGAACGGCGACG GATCGAGGCGGGTGGCGATGGACACCGGCAGCCAGAACCGGTTCGACAACTCGTATTTTACCAACATCAGGAACGGCCGTGGAGTTCTGGAATCCGACCA GCGGATGTGGACCGACAGCCGGACGAGTGGCTTTGTGGACCGGTATTTGGGCCTCAGTGGGCTTCTTGGGCTTACCTTTAATGTCGAGTTTGGGAGGTCC ATGGTGAAGATGAGTAATATTGGTGTCAAGACTGGGACAAATGGGGAAATTCGCCGTGTCTGCTCTGCGATTAATTAG
AA sequence Show only first row Show all	>Lus10012684 pacid=23148196 polypeptide=Lus10012684 locus=Lus10012684.g ID=Lus10012684.BGIv1.0 annot-version=v1.0 MATSALILTLVLAMSALTIMVHGQGTRVGFYSTSCPRVETIVRTAVQSHFASDPTVAAGLLRMHFHDCFVQGCDASVLILGTGTERTAVPNQSLNGFSTI DDAKTQLEAACPGVVSCADILALAARDSVVLTSGLSWPVPTGRRDGRVSVQQEADDNLPGPADTVDSQIQQFSTLGLNVQDLVTLSAGHTLGTASCATFS YRLYNYNNTGGPDPSIAPAFLTTLRSFCPQNGDGSRRVAMDTGSQNRFDNSYFTNIRNGRGVLESDQRMWTDSRTSGFVDRYLGLSGLLGLTFNVEFGRS MVKMSNIGVKTGTNGEIRRVCSAIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41480			Peroxidase superfamily protein...		Lus10012684 [exp]	0	1
					Lus10040377 [exp]	2.4	0.9296
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020493 [exp]	2.6	0.9456
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	9.8	0.9292
AT4G29700			Alkaline-phosphatase-like fami...		Lus10000041 [exp]	15.2	0.9284
AT1G11340			S-locus lectin protein kinase ...		Lus10041679 [exp]	20.1	0.9207
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10012880 [exp]	21.4	0.8621
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10019457 [exp]	22.0	0.9221
					Lus10029825 [exp]	23.4	0.8758
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	24.4	0.9220
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Lus10004958 [exp]	30.0	0.9122

Compare expression of checked genes

Lus10012684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.