Gene [FLAX] | FIBexDB

External link

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	TAIR10 short description
AT1G03050	565 / 0	ENTH/ANTH/VHS superfamily protein (.1)
AT4G02650	332 / 8e-106	ENTH/ANTH/VHS superfamily protein (.1)
AT1G05020	258 / 3e-77	ENTH/ANTH/VHS superfamily protein (.1)
AT4G32285	230 / 7e-67	ENTH/ANTH/VHS superfamily protein (.1.2)
AT2G25430	203 / 7e-57	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
AT2G01600	158 / 2e-41	ENTH/ANTH/VHS superfamily protein (.1)
AT4G25940	149 / 6e-38	ENTH/ANTH/VHS superfamily protein (.1)
AT1G14910	148 / 1e-37	ENTH/ANTH/VHS superfamily protein (.1)
AT5G57200	146 / 3e-37	ENTH/ANTH/VHS superfamily protein (.1)
AT5G35200	139 / 6e-35	ENTH/ANTH/VHS superfamily protein (.1)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10020824 [exp]	964 / 0	AT1G03050	636 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10019402 [exp]	363 / 2e-117	AT2G25430	580 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Lus10043260 [exp]	215 / 1e-61	AT4G32285	506 / 2e-173	ENTH/ANTH/VHS superfamily protein (.1.2)
Lus10002920 [exp]	211 / 9e-60	AT2G25430	909 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Lus10001502 [exp]	210 / 2e-59	AT2G25430	914 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Lus10035340 [exp]	180 / 4e-48	AT1G05020	489 / 1e-164	ENTH/ANTH/VHS superfamily protein (.1)
Lus10013469 [exp]	152 / 3e-39	AT2G01600	758 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10034610 [exp]	150 / 2e-38	AT2G01600	765 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10007933 [exp]	151 / 3e-38	AT2G01600	758 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.006G118100 [exp]	647 / 0	AT1G03050	605 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.018G026900 [exp]	286 / 2e-87	AT2G25430	857 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Potri.006G255000 [exp]	274 / 4e-83	AT2G25430	866 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Potri.002G224500 [exp]	266 / 1e-80	AT1G05020	500 / 2e-170	ENTH/ANTH/VHS superfamily protein (.1)
Potri.014G158600 [exp]	257 / 4e-77	AT1G05020	493 / 2e-167	ENTH/ANTH/VHS superfamily protein (.1)
Potri.018G128200 [exp]	225 / 2e-65	AT4G32285	626 / 0.0	ENTH/ANTH/VHS superfamily protein (.1.2)
Potri.006G066900 [exp]	221 / 2e-63	AT4G32285	665 / 0.0	ENTH/ANTH/VHS superfamily protein (.1.2)
Potri.008G132100 [exp]	153 / 9e-40	AT2G01600	749 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.T124907 [exp]	144 / 3e-39	AT5G35200	357 / 4e-122	ENTH/ANTH/VHS superfamily protein (.1)
Potri.010G110000 [exp]	150 / 1e-38	AT2G01600	732 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0009 [flax] [poplar]	ENTH_VHS	PF07651 [flax] [poplar]	ANTH	ANTH domain

Representative CDS sequence

Show only first row Show all

>Lus10012686 pacid=23148159 polypeptide=Lus10012686 locus=Lus10012686.g ID=Lus10012686.BGIv1.0 annot-version=v1.0

ATGGCTCCGAGCAAGATACGACGCGCCGTTGACGCGGTCAAAGACCATGCCAGCATAAGCCTGGCCAAGGTCAACAACAACAGCAGCTCCCTGTCGGACC

TGGAGGTGGCCATCGTGAAGGCCACGCGCCACGAGATGTACCCGGCAGAGGAGCGCCATATTCGGGAGATTCTGAGCCTCACGTCCTACTCGCGCGCCTA

CATCAGCGCTTGCGTTAGCACGCTCTCCAGGCGGCTCAATAAGACCCGTAACTGGACGGTGGCGCTCAAGACGCTGATGGTGATCCACCGGCTGCTCAGC

GAGGGTGACCCGGCTTACGAGCAGGAGATCTTCTTCGCTACGAGGAGGGGCACCCGGATTTTGAACCTCTCGGACTTCGTTGATTCCAGGTCTGACTCAT

CCTGGGACTACTCAGCTTTCGTGAGGATGTACGCGTTGTACCTCGACGAGAAGCTAGAGTTCAAGATGCTCGGGAGGAGAGGGAAGCGTAGTACGCTCGG

GTTTGAAGATGAGGAAGATCAGGAGGAGGATGGTGCCGGTGGTGGCAGTCGTGGTAGTCATGGAAGTAGCCGGAGCAGAGGTGGCCGCCGAAAGGGTGGT

AGTGTTGGTGGTGGCAGCAGTGGCCGCGGTAATGGAAGAGCTGCGACGCCGCTTCGTGAGATGAAGTCGGAGAAACTCATCGGAAAAGTTACACATTTGC

AGAATTTGCTTGACCGGTTCTTAGCTTGTCGCCCTACAGGTAATGCAAGACACGACAGGGTAGTCCTGGTAGCAATGTACCCAATAGTGAAAGAGAGCTT

CACTCTGTACTACGACACCACAGAGATCCTCGCGGTCCTGATCGACCGCTTCATGGACATGGACCTCCCCGAAGCGGTCAAGATCTACGAGATCTTCTGC

CGCGTCTCCAAACAGTTCGACGAGCTTGAAGCCTTCTACGGCTGGTCCAAGACAGCCGCCATTGCTCGTAGCTCCGAGTACCCTGATGTCGAGCGCATCT

CGCACAAGAAGCTCGAACTCATGGACGACTTCCTCCGCGACAAATCCATGCTCTTGCAAACCAACCGGAGCACCGCATACTACGAATCAGCCGAAGAAGA

AGAGGAGTTCAAGGATGCCGATCAAGTGAGTACCGAGGAAGACATCATCAAGGCATTGCCTCCTCCCGAGGAAGTTGAGCCAATGATAGTCGACGAAGTT

ATAAAGGACGACGAGATAAACCACCAGCAGAACGGGGAGGCGGATTTGTTGAACTTAGGGGAGTATGCGATGTCAAGCGAAGATCACTCAAACGAGTTGG

CGTTAGCGTTGTTTAACGGAGCACCGACAGCATCATCGACATCGACAGCTCCGGCTCTAACGTGGGAGGCGTTCAACGATAATGACTGGGAAACGGCGTT

GGTGGAATCGGTGAGCAGCCTGGCAGTGCAGAAACCCACACTGCCAGGCGGGTTCGATATGTCATTGCTTGACGGGATGTATCAGCAAGGAGCGACTACA

GCATCGATGTCCGGTGTAGCTGGTTACGGGGCAGTGAGCGGGAGTGCGAGCAGTGTTGCTCTTGGTTCCGCTGGAAGGCCGGCAATGCTTGCATTGCCAG

CCCCTCCGACATCGATCACATCGTTGGGAGGTGGGTTTTCGGACCCGTTTGCAGCTTCGATTGCGATCCCACCACCATCGTATGTGCAGATGTCGGAGAT

GGAGAAGAAGCAGCAGCTGTTGAGGGAGGAGCAGATGATGTGGCAACAGTACGGAGCTAATGGTATGCAGGGGAATGTTGGGTATGGAATGGTACAACAA

CAGAATAGTTACAACATGGGTGGATACAGTACTCATGGTTACTGA

AA sequence

Show only first row Show all

>Lus10012686 pacid=23148159 polypeptide=Lus10012686 locus=Lus10012686.g ID=Lus10012686.BGIv1.0 annot-version=v1.0

MAPSKIRRAVDAVKDHASISLAKVNNNSSSLSDLEVAIVKATRHEMYPAEERHIREILSLTSYSRAYISACVSTLSRRLNKTRNWTVALKTLMVIHRLLS

EGDPAYEQEIFFATRRGTRILNLSDFVDSRSDSSWDYSAFVRMYALYLDEKLEFKMLGRRGKRSTLGFEDEEDQEEDGAGGGSRGSHGSSRSRGGRRKGG

SVGGGSSGRGNGRAATPLREMKSEKLIGKVTHLQNLLDRFLACRPTGNARHDRVVLVAMYPIVKESFTLYYDTTEILAVLIDRFMDMDLPEAVKIYEIFC

RVSKQFDELEAFYGWSKTAAIARSSEYPDVERISHKKLELMDDFLRDKSMLLQTNRSTAYYESAEEEEEFKDADQVSTEEDIIKALPPPEEVEPMIVDEV

IKDDEINHQQNGEADLLNLGEYAMSSEDHSNELALALFNGAPTASSTSTAPALTWEAFNDNDWETALVESVSSLAVQKPTLPGGFDMSLLDGMYQQGATT

ASMSGVAGYGAVSGSASSVALGSAGRPAMLALPAPPTSITSLGGGFSDPFAASIAIPPPSYVQMSEMEKKQQLLREEQMMWQQYGANGMQGNVGYGMVQQ

QNSYNMGGYSTHGY

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10012686 [exp]	0	1

Lus10012686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10012686 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10012686 coexpression network