Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44450 525 / 0 BGLU15 beta glucosidase 15 (.1) AT2G44480 525 / 0 BGLU17 beta glucosidase 17 (.1.2) AT5G44640 524 / 0 BGLU13 beta glucosidase 13 (.1) AT5G42260 515 / 9e-180 BGLU12 beta glucosidase 12 (.1) AT3G60130 508 / 1e-176 BGLU16 beta glucosidase 16 (.1.2.3) AT2G25630 489 / 9e-170 BGLU14 beta glucosidase 14 (.1) AT5G24550 468 / 6e-161 BGLU32 beta glucosidase 32 (.1) AT1G51470 463 / 3e-159 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1) AT1G47600 461 / 3e-158 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2) AT3G60140 462 / 5e-158 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020823 [exp] 764 / 0 AT5G42260 383 / 3e-129 beta glucosidase 12 (.1) Lus10008503 [exp] 707 / 0 AT2G44450 489 / 2e-169 beta glucosidase 15 (.1) Lus10026057 [exp] 602 / 0 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10036445 [exp] 577 / 0 AT2G44450 506 / 8e-176 beta glucosidase 15 (.1) Lus10031235 [exp] 566 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10024065 [exp] 561 / 0 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1) Lus10031251 [exp] 545 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 543 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 538 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085301 [exp] 565 / 0 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 564 / 0 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G015100 [exp] 562 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 544 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G227300 [exp] 516 / 4e-180 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.005G059500 [exp] 505 / 3e-175 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G227200 [exp] 499 / 2e-173 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 496 / 4e-172 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 496 / 8e-172 AT5G42260 525 / 0.0 beta glucosidase 12 (.1) Potri.004G110620 [exp] 495 / 2e-171 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10012687 pacid=23148154 polypeptide=Lus10012687 locus=Lus10012687.g ID=Lus10012687.BGIv1.0 annot-version=v1.0 ATGGTGAAAGCTGCATCAACCTATTTGGTTGTTGCCATACTACTCATTGTGGTTGATTTAGCATTTGGAGTATTGAGTTCATCGAATCATCATCGATCCG ATGTTCATCGTAAAGATTCGAACTTCAGCCAGCATCATCATAACCTTAATCGAAGCCAGTTTCCGCAAGATTTCCTCTTTGGTGCAACTTCCTCTTCTTA TCAATACGAAGGTGCGACATGGGAAGACGGTAGACGTCCTAGTATATGGGATGCTTACACACATACTTACACAGAGCGGATTATGAACGGAAGCAACGGA GACGTGGCTACTAACTCGTACAACTTATACAAGGATGACATAACACTTGTGAAGCAACTTGGAATGAATGCTTACAGATTTTCGATCTCCTGGTCCAGAG TGTTGCCTAATGGAACCTTAAGTGGAGGTATCAACAAAAGAGGAATCCAATACTATAATAAGGTCATCAATGAGACCCTATCACAAGGATTGACACCGTT CACGACGCTTTTCCACATGGACTACCCTCAAGCATTGCAAGATGAATACGGGGGCTTCTTAAGTCGCAGAATCATGAATGATTTTCGTAACTTTGCGGAT TTGTGCTTCAAAGAATTTGGAGACAGAGTGAAATATTGGGTGTCGATAAACGAGCCGCATACTTTGAGCAGGGGAGGATTCACTGTTGGTGATCTTGCAC CCGGCCGTTGCAGTAACAGCGACAGAAACTATACGTGCGACATCGGAAATTCTGGCACAGAACCGTATATCGTGTCTCACAATCAACTTCTAGCTCATGC TGCTGTTGTTCAACTGTACAGACAAAAATACCAGGCGATTCAAAAGGGTATAATCGGAATGTCGATGAACGTAGATTGGTTCATGCCTTACTCATCGAGC GAGGGAGACGAAAGAGCAGCAAACAGATGCCTTGACTTTATGTTTGGGTGGTTCATCGATCCAATAACCAGGGGTGATTATCCAGAGAGCATGAAGCAGA ATGTCGGGAAACGACTGCCAAGATTTACTAAGAAAGAATCCGAACTGTTGAAAGGGTCGTTTGATTTCATAGGGGTCAACTATTACACTGCCCGGTATGT AATCGACCAACCCGACGTTGCTGACCCGAACCATCCGAGCTATTTGACCGATCCACATGCCATCGTGACTAATGAACGCAATGGGGAATTACTTGGTCCT CAAACTGCAGCACCATGGATTTGCATTTATCCTGAAGGCCTTGCTAAAGTCTTGCTCCATATAAAGGAAAATTACCAAAACCCCCTTGTCTATATTACCG AAAACGGGGTTCCTGAGATTGGGAAGTACACACACTCACCACTGAAAGCTACGCCAGATGATACCATGAGAGTTTCCTTCTACAGAGATCATCTTTCTTC CGTCAGAAACGCCATGCGGAAGGGAGCCAACGTGAAGGGCTACTTGGTCTGGACGTTACTGGACTGCTTCGAGTGGCTTTCGGGTTACCATTTGAGATTC GGGTTGCATTATGTTGACAGTAGAAACCCATCTGTCAGAATCCCGAAACTCTCTGCTATTTGGTTCAGAAAGTTTCTCGCGGGAAATCAGAATAAGGGTT CCAAACATTTGTGCAAATAG
AA sequence Show only first row Show all	>Lus10012687 pacid=23148154 polypeptide=Lus10012687 locus=Lus10012687.g ID=Lus10012687.BGIv1.0 annot-version=v1.0 MVKAASTYLVVAILLIVVDLAFGVLSSSNHHRSDVHRKDSNFSQHHHNLNRSQFPQDFLFGATSSSYQYEGATWEDGRRPSIWDAYTHTYTERIMNGSNG DVATNSYNLYKDDITLVKQLGMNAYRFSISWSRVLPNGTLSGGINKRGIQYYNKVINETLSQGLTPFTTLFHMDYPQALQDEYGGFLSRRIMNDFRNFAD LCFKEFGDRVKYWVSINEPHTLSRGGFTVGDLAPGRCSNSDRNYTCDIGNSGTEPYIVSHNQLLAHAAVVQLYRQKYQAIQKGIIGMSMNVDWFMPYSSS EGDERAANRCLDFMFGWFIDPITRGDYPESMKQNVGKRLPRFTKKESELLKGSFDFIGVNYYTARYVIDQPDVADPNHPSYLTDPHAIVTNERNGELLGP QTAAPWICIYPEGLAKVLLHIKENYQNPLVYITENGVPEIGKYTHSPLKATPDDTMRVSFYRDHLSSVRNAMRKGANVKGYLVWTLLDCFEWLSGYHLRF GLHYVDSRNPSVRIPKLSAIWFRKFLAGNQNKGSKHLCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10012687 [exp]	0	1

Compare expression of checked genes

Lus10012687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.