Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60890 872 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 867 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 692 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G77740 502 / 5e-168 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 494 / 5e-165 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G07960 340 / 4e-106 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G26420 339 / 7e-106 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT2G41210 340 / 2e-105 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G56960 338 / 1e-104 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT4G01190 199 / 9e-57 ATPIPK10 phosphatidylinositol phosphate kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020821 [exp] 1370 / 0 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10015456 [exp] 1067 / 0 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10001377 [exp] 1063 / 0 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10021505 [exp] 672 / 0 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 671 / 0 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10014408 [exp] 637 / 0 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10023909 [exp] 631 / 0 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10018200 [exp] 523 / 1e-175 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 520 / 3e-174 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211200 [exp] 953 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 926 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.006G121200 [exp] 612 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.005G172800 [exp] 524 / 5e-176 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 523 / 1e-175 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 358 / 7e-113 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 352 / 2e-110 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 345 / 3e-107 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.001G027900 [exp] 341 / 9e-106 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G196000 [exp] 336 / 6e-104 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10012689 pacid=23148160 polypeptide=Lus10012689 locus=Lus10012689.g ID=Lus10012689.BGIv1.0 annot-version=v1.0 ATGGTGGTGTTGAGACAACTCATACTAGAAGAGGATGTAAGGATTGGCAGGAAGGTGTTGCCAAATGGAGATGTTTACATTGGCGATTTCGAAGGACAAC TTCCCCAAGGCAAAGGCAAGTACATCTGGTCACAAGATGGCACAGTCTATGATGGAGAATGGGAAGAAGGCAAGATGACAGGAGACGGCCAGATGCTATG GTCAGCAGGAGCCAAGTATGAAGGCGAATTCTCCGGTGGCTACTTTCATGGCTCGGGAACCTTTACCGACATCGATGGCTCCGAATATCGAGGCTGCTGG AGGATGAACATACGACACGGGATTGGCAACAAGAAGTACTCCAACTCGGATGTCTACGAAGGGTGTTGGAAAGAAGGTGTCCATGAAGGTAATGGCAAAT ACACATGGAGCAATGGCAATGTATATGTAGGGAACTGGAAAAATGGGGTCATGAACGGTAGAGGGATCATGAAGTACTTGACGAGTGGGGAAATCTTCGA TGGTTCATGGTTGAATGGGCTCCGACACGGTTCCGGTGTTTGCAGGTTTGAAGATGGTGGGTTCTACTTGGGGATATGGACTAAAGGTTTGAAAGATGGG AAGGGTACATACTATCCTGCTGGGACTAAACATCCTTCTTTGAAGACATGGTGTGAACTTCTTGGTTACGACGATATCGAGAGTAGCTTTCAAACATCGA CGAATACTGGGAAGCTGACGATTTCTGGGCGGATGAGGAACAGGACACGAAGAACGTCATTATCGTCAAAGAAGAAGAAGAGAGAGTCGAGTCATTCGGG GAGGGAGTTGATATTTCATGACTTGCCGAGTGTGCTGGCTCGAATCACGGAGGATGTTCATAGTGAGGTTGTGGATAATGACACTGCTACTACTGCTTAT GAACGTGAGTACATGCAAGGAGTGTTGGTTAAGGAGAAGATTCTGACTGCAGAGCCGTCAAGAAAGGCTAAGCATAAGAACAGGTTCAGTGTCAAAGATG GCAAGACAAAGTCATACATTGGTATTTTCAGGAGGAGCCAGAGCTATTATCTGATGCTGGATCTGCAACTTGGTATCAGGTACATTGTCGGGAAGATGAC ACCGGTGCCAATGCGAGAAGCACGTCCTTCTGATTTCAGGGATCGTGCTAGAATCCACATGTACTTCCCTCGAAATGGGTCCCGATTCACGCCGCCTCAC TACTCCTTTGACTTCTACTGGAAAGATTACTGTCCTATGGTCTTCAGGAACCTAAGAGAAATGTTCAAGTTAGATGCAGCTGATTACATGATGTCCATCT GTGGAGATGATGGTTTGACAGAGATTTCATCTCCTGGGAAAAGTGGCAGTATCTTCTACCTTTCTCATGATGATAGATTTGTGATCAAGACCCTAAGTAA ATCTGAGCTCAAGACCCTTCTGAGGATGTTACCACAATACTATGCTCATGTCGGAAGTTACGAGAACACCCTCATAACGAAGTTCTTCGGGGTTCATCGG ATAAAACTAAGAGGAGGACGAAAGGTGCGGTTTGTGGTAATGGGTAACATGTTCTGCACAGAGTTGAGAATTCATCGACGTTATGATCTGAAGGGCTCAT CTCATGGAAGATACACACATAAAGAGAAGATGAAAGAGGGTACTACATTAAAGGACCTAGATTTGGATTATGAGTTTCACATGGACAAACTGCTCAGACA GTCCCTCTTCAAACAAATTCATCTGGATGCCAAGTTCTTAGCGTCTCAGAACATCATAGATTACAGCCTTCTCCTGGGGTTGCACTTCAGAGCGCCAGAG CCTCAAAAGGGGTTGATGTTAGTAACTCACGAGCCTAGCTTTGTCAACACTGCTCCTGGTCCTCATATCAGAGGCAGCACCCTCAAAGCTTACTCCGTCG GGGAAAAAGAAGTCGACCTGTTACTCCCCGGAACTGGGAGATTGAGGGTTCAGTTAGGAGTGAATATGCCATCTCAAGCGAACCGGAAGCTGCAGCAAGA AGAGGCCGATGATGGTTCGACCACTAAAGAGGTAGATGAACTGTATGAGGTGTATGATGTGGTTCTTTACATGGGGGTCATCGACATACTGCAAGAGTAC AATGCACGGAAGAAAGCTGAGTATGCCTACAAATCAATGAGATTCGACTCTGTAACCATTTCGGTGGTCGAACCGGAGTTGTACTCGAACCGGTTCATCG ATTCCTTGCAGAAAGTTTTTCCTGACACTAAACCTACTAATACATAG
AA sequence Show only first row Show all	>Lus10012689 pacid=23148160 polypeptide=Lus10012689 locus=Lus10012689.g ID=Lus10012689.BGIv1.0 annot-version=v1.0 MVVLRQLILEEDVRIGRKVLPNGDVYIGDFEGQLPQGKGKYIWSQDGTVYDGEWEEGKMTGDGQMLWSAGAKYEGEFSGGYFHGSGTFTDIDGSEYRGCW RMNIRHGIGNKKYSNSDVYEGCWKEGVHEGNGKYTWSNGNVYVGNWKNGVMNGRGIMKYLTSGEIFDGSWLNGLRHGSGVCRFEDGGFYLGIWTKGLKDG KGTYYPAGTKHPSLKTWCELLGYDDIESSFQTSTNTGKLTISGRMRNRTRRTSLSSKKKKRESSHSGRELIFHDLPSVLARITEDVHSEVVDNDTATTAY EREYMQGVLVKEKILTAEPSRKAKHKNRFSVKDGKTKSYIGIFRRSQSYYLMLDLQLGIRYIVGKMTPVPMREARPSDFRDRARIHMYFPRNGSRFTPPH YSFDFYWKDYCPMVFRNLREMFKLDAADYMMSICGDDGLTEISSPGKSGSIFYLSHDDRFVIKTLSKSELKTLLRMLPQYYAHVGSYENTLITKFFGVHR IKLRGGRKVRFVVMGNMFCTELRIHRRYDLKGSSHGRYTHKEKMKEGTTLKDLDLDYEFHMDKLLRQSLFKQIHLDAKFLASQNIIDYSLLLGLHFRAPE PQKGLMLVTHEPSFVNTAPGPHIRGSTLKAYSVGEKEVDLLLPGTGRLRVQLGVNMPSQANRKLQQEEADDGSTTKEVDELYEVYDVVLYMGVIDILQEY NARKKAEYAYKSMRFDSVTISVVEPELYSNRFIDSLQKVFPDTKPTNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	0	1
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10025294 [exp]	1.4	0.8610
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	1.7	0.8466
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	4.0	0.8543
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	6.9	0.8094
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031883 [exp]	7.2	0.8124
AT1G52190			Major facilitator superfamily ...		Lus10035860 [exp]	7.7	0.8387
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	8.4	0.8360
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	11.3	0.8315
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10027279 [exp]	11.5	0.8388
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10038733 [exp]	12.2	0.7570

Compare expression of checked genes

Lus10012689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.