Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61000 400 / 2e-136 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020820 [exp] 831 / 0 AT1G61000 404 / 4e-138 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G116200 [exp] 509 / 2e-179 AT1G61000 481 / 7e-169 unknown protein Potri.017G043000 [exp] 477 / 8e-167 AT1G61000 460 / 1e-160 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03800 [flax] [poplar] Nuf2 Nuf2 family
Representative CDS sequence Show only first row Show all	>Lus10012690 pacid=23148167 polypeptide=Lus10012690 locus=Lus10012690.g ID=Lus10012690.BGIv1.0 annot-version=v1.0 ATGTCGAAGTTTCAGTACCCGGTGATGTCCACCGCCGACATACTCTCGATACTCCAAGGTTCGGAAATCGCCGTCATCACTGAAAACGATCTCAGGAACC CTACTCAAGATCTCGTCATCAACATCTACTCCCGTATCCTAGTCCATCTCGACGCTCTCAATGAAGATGAGAATGAACAGTTCGACTTTTCTGCGCTAGA GCATCTAGAGAACCCTGACCACCACGTAGACTCCTTAAGAATCATGAATCTGTATGTCCGGATAAAGGAAGTTATGAGTCTGGCTCATTGCCCTGTGCAA ATCAACTTCAAAGACCTCGTCAAGCCAGAAGGCAAGCGCACGGAGTTTTTCATCGGTACCATTCTTAATTTCTGCATTCACAAGGAGACGAAGATAAATT TGATTTCACCAATAGTGGATGAGCTTACGATTCTTGATGAGCAGCGGAGGGAGTTGGAGAGTACTAATGCTGAGAAGAATGCAGAAATTGATGGCTACAT TGCTGCCAGAGAAAACGAGTTGCCCGAAGTTCAGGAGTTGGAGGCTCAAGTCAAGGAATTGCATCAGACAATTGCCAACTTGAACAGTGAGCAGATGTCA CTGAGAGCTAATTTTAGGAAGTTGAAGGAGAAAACTGCAGAGAAGGATGGGGAGTTGCGTGAGGGTTTGAGTTTTGAATTGCTGATGGTGACTGCTCCAT CTTCATTTTGGTTCGTAAACCAGATTTCTAAGGCGGAATTTGATCTGGTGCAAAGCCTCCAGGAGAATGCAAGTTTACGTTCAAAAATTGTTCAGTCTCC AGACAAGCTGCAGAAAGCTCTAGAAGAGAAGAAATCAATTCGGGAGGAAGCAAGGAACGCTGAGAAGCTAGCACTGCAAACATTTCAGCAGAAGACTTCG ATGCTTGAGGTGTATTCCAAGACTTCCAAGAAATTATCAAAGCTTCATTCGCAGATGCAGGCTATACATGAGCAGATGAATTCTGCTAAATCCCTTGAAA AGGACTTGAAGGCTTTGAAAGCAAAGATTAGTGACGATGAAATTATTGATAAGTCACTTGATGCAAAAATTGCTGAACGCCAATCGAAAGCACAACAGCT GGCCGAGCAGAGAAACCGACTGGAGAAAGAAAGGGAGATCAAATTTGAAGAAGCCAACAATGTATTGCGCAACAAACAGCTCGAAGTAGAGTCCAAGAAA CGCGATCTAGAAGCAAGGCAACAGGAAGTTGTGGCTATTCTTGGAGAGGCAGACGCCTTAAAATCAAAGGCCAAGATGATACATGACAATGGAATAGCTA AAGTTCAGGCCTTCACAAAAAAATGTGAAGAGCTAGTTGAACAGTTTGATCAATATAAGAGCTCCATTAGTGATCTCATTGCTTCTCATGAGCCAGGGCT GTAG
AA sequence Show only first row Show all	>Lus10012690 pacid=23148167 polypeptide=Lus10012690 locus=Lus10012690.g ID=Lus10012690.BGIv1.0 annot-version=v1.0 MSKFQYPVMSTADILSILQGSEIAVITENDLRNPTQDLVINIYSRILVHLDALNEDENEQFDFSALEHLENPDHHVDSLRIMNLYVRIKEVMSLAHCPVQ INFKDLVKPEGKRTEFFIGTILNFCIHKETKINLISPIVDELTILDEQRRELESTNAEKNAEIDGYIAARENELPEVQELEAQVKELHQTIANLNSEQMS LRANFRKLKEKTAEKDGELREGLSFELLMVTAPSSFWFVNQISKAEFDLVQSLQENASLRSKIVQSPDKLQKALEEKKSIREEARNAEKLALQTFQQKTS MLEVYSKTSKKLSKLHSQMQAIHEQMNSAKSLEKDLKALKAKISDDEIIDKSLDAKIAERQSKAQQLAEQRNRLEKEREIKFEEANNVLRNKQLEVESKK RDLEARQQEVVAILGEADALKSKAKMIHDNGIAKVQAFTKKCEELVEQFDQYKSSISDLIASHEPGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61000			unknown protein		Lus10012690 [exp]	0	1
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	1.0	0.9180
AT4G39380			unknown protein		Lus10033530 [exp]	1.4	0.9062
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	2.8	0.8880
AT4G01270			RING/U-box superfamily protein...		Lus10005126 [exp]	3.2	0.8833
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10006266 [exp]	4.6	0.8880
AT5G07810			SNF2 domain-containing protein...		Lus10003469 [exp]	8.2	0.8203
AT2G24970			unknown protein		Lus10020094 [exp]	11.6	0.8471
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	12.0	0.8722
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10036019 [exp]	13.4	0.8276
AT3G49890			unknown protein		Lus10011541 [exp]	14.6	0.8019

Compare expression of checked genes

Lus10012690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.